Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1358 98.7 2e-15 seq5346 89.7 9e-13 seq2115 89.7 9e-13 >seq1358 Length=322254 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/139 (75%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| ||| || || |||||||||||||||| ||| ||| |||||| || Sbjct 167 AGTGTACTTTCTTTTTGAATATTATAATCAGATAAAGTCCTATTGTCTTCCAATTGTTTA 108 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || ||||| ||||| ||||| | ||| ||||||||||||| ||||| ||| Sbjct 107 CCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGGATCTTGGCT 48 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||| ||||| |||| Sbjct 47 TTTACATTCTCAATAGTAT 29 >seq5346 Length=541963 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| ||| || || ||||||||||| |||| ||| ||| |||||| || Sbjct 231436 AGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTA 231377 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || ||||| ||||| ||||| | ||| |||| |||||||| ||||| ||| Sbjct 231376 CCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCT 231317 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||| ||||| |||| Sbjct 231316 TTTACATTCTCAATAGTAT 231298 >seq2115 Length=629047 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| ||| || || ||||||||||| |||| ||| ||| |||||| || Sbjct 360808 AGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTA 360867 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || ||||| ||||| ||||| | ||| |||| |||||||| ||||| ||| Sbjct 360868 CCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCT 360927 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||| ||||| |||| Sbjct 360928 TTTACATTCTCAATAGTAT 360946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903348277409920