Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1114 143 6e-29 seq2310 111 4e-19 seq5346 109 1e-18 seq2115 109 1e-18 >seq1114 Length=8361563 Score = 143 bits (158), Expect = 6e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || || || || || ||| |||||||| ||||| Sbjct 2710310 AAAACCCTTACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCTGACACTATCGAAAAT 2710369 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| |||||||| ||||| || ||| || || |||||| | ||||| Sbjct 2710370 GTAAAAGCGAAA-ATTCAAGACAAAGAGGGCATTCCACCAGATCAGCAAAGATTGATCTT 2710428 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||||||||||||||| | || ||| |||| |||||| ||||||| || || Sbjct 2710429 CGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCCGACTACAACATCCAGAAGGAATC 2710488 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||||| |||||| Sbjct 2710489 GACACTTCACTTGGTGTTGAGGCTTCGA 2710516 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||| ||||| || | |||||| || || || ||||||| || ||||| | ||| || Sbjct 2710516 TCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGT 2710457 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| ||| || ||||||||||| | | ||| ||| Sbjct 2710456 ACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGA 2710411 >seq2310 Length=6428792 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| ||||| ||||| ||| ||| Sbjct 5744595 CAGATTTTTGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGAC 5744654 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| ||||||||||| ||||| || || || ||| || Sbjct 5744655 ACAATTGAAAATGTTAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGACCAGCAG 5744714 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| || ||| ||||||||||| | || ||| | || |||||| || Sbjct 5744715 AGATTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAACATC 5744774 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| || || || |||||| Sbjct 5744775 CAGAAGGAATCCACACTTCAC 5744795 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | ||||| || || ||||| ||||| ||||| ||| ||| Sbjct 5747103 CAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGAC 5747162 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| || ||||| || ||||| || || ||| || Sbjct 5747163 ACCATCGAGAATGTTAAAGCCAAA-ATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCA 5747221 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | |||||||||||||| || |||||||| ||||| | || | | || |||||| | Sbjct 5747222 ACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACACTCTCGGACTACAACAT 5747281 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 |||||| ||||||||||| ||| Sbjct 5747282 CCAGAAGGAGTCTACTCTGCAC 5747303 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || ||||| || || || ||||| ||| ||||||| Sbjct 5745963 CAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCTGAC 5746022 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| || || ||| || Sbjct 5746023 ACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAG 5746082 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||| || ||| | || |||||| | || | | || |||||| || Sbjct 5746083 AGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACACTCTCTGACTACAACATC 5746142 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || ||| Sbjct 5746143 CAAAAAGAGTCCACCCTCCAC 5746163 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || ||||| || || || ||||| ||| ||||||| Sbjct 5746647 CAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCTGAC 5746706 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| || || ||| || Sbjct 5746707 ACCATCGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGACCAGCAG 5746766 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||| || ||| | || |||||| | || | | || |||||| || Sbjct 5746767 AGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACACTCTCTGACTACAACATC 5746826 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || ||| Sbjct 5746827 CAAAAAGAGTCCACCCTCCAC 5746847 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || ||||| || |||||| | ||||||||| || ||||| |||| || ||||| Sbjct 5746896 ACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCCGACACCATCGAGAATGTTAAAGCC 5746955 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| || ||||| || || ||| ||| | || ||||||||||| || Sbjct 5746956 AA-GATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTCTCATCTTCGCCGGCAA 5747014 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||||| ||||| | || | | || |||||| |||| || ||||| || ||||| Sbjct 5747015 ACAGTTGGAGGATGGCCGTACACTCTCGGACTACAACATCCAAAAGGAGTCCACACTTCA 5747074 Query 206373 C 206373 | Sbjct 5747075 C 5747075 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || |||||| | ||||||||| || ||| Sbjct 5746191 CAGATCTTTGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCCGAC 5746250 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| || ||||| || || ||| || Sbjct 5746251 ACCATCGAGAATGTTAAAGCCAA-GATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCA 5746309 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || ||||||||||| || ||| | |||||||| | || | ||||||| || | Sbjct 5746310 ACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTATAATAT 5746369 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 ||| |||||||| || || ||| | || || Sbjct 5746370 CCAAAAAGAGTCCACCCTCCACTTGGTGTT 5746399 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || ||||| | || |||||| |||||| Sbjct 5745735 CAGATCTTTGTGAAGACCTTAACAGGAAAGACCATCACCCTCGAGGTGGAACCCTCTGAC 5745794 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| || ||||| || || ||| || Sbjct 5745795 ACCATCGAGAATGTTAAAGCCAA-GATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCA 5745853 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || ||||||||||| || ||| | |||||||| | || | ||||||||||| | Sbjct 5745854 ACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTACAACAT 5745913 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||||| || || || || ||| Sbjct 5745914 TCAGAAGGAATCCACACTCCAC 5745935 >seq5346 Length=541963 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| || | |||||||| || |||||||||||||| ||| |||||| Sbjct 231240 CAGAT-TTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCTGA 231298 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || ||||| ||||| ||||| ||||||||||| || ||| || Sbjct 231299 TACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAACA 231358 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||||| || || || || || |||||||| |||||||| ||||||| || | Sbjct 231359 GAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAATAT 231418 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| ||| || || | ||||| ||| Sbjct 231419 TCAAAAAGAAAGTACACTACATTTGGTTTTAAGA 231452 >seq2115 Length=629047 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| || | |||||||| || |||||||||||||| ||| |||||| Sbjct 361004 CAGAT-TTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCTGA 360946 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || ||||| ||||| ||||| ||||||||||| || ||| || Sbjct 360945 TACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAACA 360886 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||||| || || || || || |||||||| |||||||| ||||||| || | Sbjct 360885 GAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAATAT 360826 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| ||| || || | ||||| ||| Sbjct 360825 TCAAAAAGAAAGTACACTACATTTGGTTTTAAGA 360792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181736428335812