Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3133 143 3e-29 seq1114 143 3e-29 seq2310 89.7 5e-13 >seq3133 Length=7630298 Score = 143 bits (158), Expect = 3e-29 Identities = 291/425 (68%), Gaps = 14/425 (3%) Strand=Plus/Plus Query 24910 TACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAACAGTTCCC 24969 |||| ||| | || || ||||| ||||| ||||| |||||| | | || | | Sbjct 1021701 TACGGTTTTATTCCAATTTGCGGAGGCGATGGCATCAACGACAGTTTGAAGGAAATCGAA 1021760 Query 24970 GGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGGTAACCATT 25029 || ||||| | || || || || || ||| ||| ||||| ||||| || || | ||| Sbjct 1021761 GGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGCGAAGATTTCAAAGTTTCAATT 1021820 Query 25030 CACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGAACGAGCCG 25089 ||||| || ||||| || | ||||| || || || || | || | ||||| ||||| Sbjct 1021821 CACGATCCGTGGGCTGCTCTTCAGAAGCCACAAAAGGGTCTTTCTTCCTGGAATGAGCCA 1021880 Query 25090 TACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACTTGAAGGTG 25149 ||||||||||||||||| || | ||| || ||| ||| | || || | || | Sbjct 1021881 TACAAAGGCAACTTTGGTCAGCTGATGTCTCTTAAACAAGCCAGGCCTGACCTTAAAATC 1021940 Query 25150 CTGGCGTCGATCGGCGGCTGGAC-CTTGTCAGATCCATTCT-----TTCACATGCATGAC 25203 || | || ||||| |||||||| |||| ||||||| |||| |||||| || | Sbjct 1021941 CTACCTTCCATCGGTGGCTGGACTCTTG-CAGATCCCTTCTTCTTCTTCACAGACA--AA 1021997 Query 25204 GCGACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAAGTT 25262 | || | | | | || ||| | ||||| || | || || || ||| |||||||| Sbjct 1021998 GAGA-AGAGAG---ATCGCTTCGTGGATTCTGTGAAAGATTTCCTTCAGACATGGAAGTT 1022053 Query 25263 TTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCACGT 25322 |||||||| || || || || ||||| || || ||||| || || || ||||| || | Sbjct 1022054 CTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGGTAAGGGAGCTAATCCAGACCT 1022113 Query 25323 CGGCA 25327 |||| Sbjct 1022114 TGGCA 1022118 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 51732 GCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCG 51791 ||||| | ||||| | |||||| |||||||| || | ||||| ||||||||||| || Sbjct 7349250 GCCTCAATGTTGCCGAGGTCGCCAACGTGGCGTATGGTGGCGTTGGGAGCGCCGTGCTC- 7349308 Query 51792 CTGC-CGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAA 51850 |||| | ||||||| ||||| | || || || ||||||||||| || |||| || || Sbjct 7349309 CTGCTTGTTGGGGTTAAAGTGGGCCCCAGCAGATGTGCAGCCGTTTGTGTTGTCACCAAA 7349368 Query 51851 TTCGTGCACGTGGAATCCGTG 51871 || ||||||||||| ||||| Sbjct 7349369 CTCATGCACGTGGAAACCGTG 7349389 >seq1114 Length=8361563 Score = 143 bits (158), Expect = 3e-29 Identities = 486/748 (65%), Gaps = 18/748 (2%) Strand=Plus/Plus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || ||||| ||| |||| ||||| ||||| || ||||| || || | ||| | || | Sbjct 3013670 GCGGCAGGCTTTATGCGTAAATAGTACATTCCTGTTTTCAGACCCATTTTCCATGCGTAA 3013729 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 |||||||||||||| | | || |||| || ||||| || ||||| ||||| Sbjct 3013730 AAGTGAATCGAAGTCAATTTTCCATAATTCGGTTCAGCCACATGAATGTTAAAAGATTGA 3013789 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCT-TCAT 146750 ||||| ||||| || || | || || ||||| | ||| | ||||| || || Sbjct 3013790 CTTTGGTCTATAAATGCACCTCTATCAGCAGCCATTTTAATTGT-TGTTTTAACTGAAAT 3013848 Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810 ||||||| | ||||| || | | | | | | | ||| |||| ||||| |||||||| Sbjct 3013849 TTCCCAAACTGTTTTATATAACTCTCTTATGTCCTTTGGTATACGCTCAATATTTTGAAT 3013908 Query 146811 AGAGCCCTTGTGCGCAAAAATA--GTGTTTCGTATTTCGGGCGTGTAAA--GGTTTAGTT 146866 || || || | || ||| | ||| | | | | |||| | | | Sbjct 3013909 GGAACCATTATTGTGAATTATAAGATTCTTCATGTCTTCATCCCATAAATCCGCCTGTGT 3013968 Query 146867 TAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTC 146926 ||| ||| | ||||| || || || || || || || || | || ||||||| Sbjct 3013969 TAA----GTCTCGCAATAAATGATGGTTAACAACCTGGAATTCTCCAGACAAAACACGTC 3014024 Query 146927 TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCG 146986 | | || | || ||||| || ||||| ||||||||||| ||||| ||||| || | Sbjct 3014025 TTTGGTAAATGTTTGATGTGAATGGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTG 3014084 Query 146987 TGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGG--AT 147044 | | ||| |||||||| || | || | ||| || || || || | | || || Sbjct 3014085 TAGATGCTGTAGGCATTGGAGCTAATAAAAGTGAGTTGCGAAGCCC--ATGTTTGGCAAT 3014142 Query 147045 GTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAG--GGCGTCACGTTCCACATGTCG 147102 || || || ||| ||||||| ||| || || || || | ||||||||| Sbjct 3014143 TTTTTCTTTTAAAACAGACCAGTCC--CATAGATCAGTTGGAGTTTTATCCCACATGTCA 3014200 Query 147103 TACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGC 147162 || || | | ||| | || | ||||| || | | ||| | || ||| || Sbjct 3014201 TATTGTAAGATGCCTTGGCTTGTTGGACTTCCTTCATATGTACTATAAACTCCCTCTTTT 3014260 Query 147163 TGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTG 147222 ||||||| |||||| || ||||| | ||||| || ||||| |||||| |||||||| | Sbjct 3014261 TGCGCCAGTTCACAACTGGCCTCTAATGCTCCGTAATATATAGTTTCGAAGATTTGTTGG 3014320 Query 147223 TTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCC 147282 || || | |||||||| || || || || || |||| || ||||| | ||| || Sbjct 3014321 TTAAGTTTAATTGCTTCTTCACTTTCATATGGAATGCGCAATAGTACAAATGTATCAGCT 3014380 Query 147283 AAACCCTGGATACCGACGCCGATAGGTC 147310 ||||| || | || | || ||||||| Sbjct 3014381 AAACCTTGCACTCCAATACCTATAGGTC 3014408 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| ||||| || | | || || || || |||||||||||| || ||||| ||| Sbjct 2710507 CAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATC 2710448 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | |||||| |||| |||| | | || |||||||| || ||||| ||||| || Sbjct 2710447 TTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTC 2710388 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||| | | ||| | ||| || | | || || || | ||| | || Sbjct 2710387 TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGT 2710328 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| || || ||||||| ||| |||||||| Sbjct 2710327 TTTACCCGTAAGGGTTTTTACGAAGATCTGCAT 2710295 >seq2310 Length=6428792 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | || || ||||| || |||||||| | || || ||||||| Sbjct 5745484 ACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTCG 5745425 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | |||| ||||| || |||||||| || |||||||| || || | Sbjct 5745424 AGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 5745365 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | || || | || || || || | || | ||||| Sbjct 5745364 ATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTTTTG 5745305 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | ||||||||||| Sbjct 5745304 CCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | || || || || ||||||||||| || || Sbjct 5745041 ACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGT 5744982 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| |||||||| |||| | |||| | | ||| || ||||| || ||||| Sbjct 5744981 TCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCC 5744922 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| ||| | | ||| | || || | || |||||||| | Sbjct 5744921 TTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAA 5744862 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| || || | || |||||||| Sbjct 5744861 TGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578004029920