Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3133 347 1e-90 seq5346 129 5e-25 seq2115 129 5e-25 seq1114 114 1e-20 seq1358 89.7 5e-13 >seq3133 Length=7630298 Score = 347 bits (384), Expect = 1e-90 Identities = 818/1221 (67%), Gaps = 38/1221 (3%) Strand=Plus/Plus Query 59923 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGAT 59982 ||||| || | || || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 1021608 AAAGTTGTCGGAGCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGAT 1021667 Query 59983 CGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGC 60042 || || || | ||||||||| | ||| || | ||||| |||||||| || ||||| ||| Sbjct 1021668 CGTGTACCAATTCCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGC 1021727 Query 60043 GACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCG 60102 || || |||||||||||| | || || || |||||| |||| ||||| ||||| Sbjct 1021728 GATGGCATCAACGACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCA 1021787 Query 60103 TGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAA 60162 || || || || || || ||||| |||||||||||||| ||||| || | ||||| Sbjct 1021788 TGCAGCGGCCGCGAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAG 1021847 Query 60163 CCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATG 60222 || ||||| | | | ||||| || ||||||||||| || || || || | ||| Sbjct 1021848 CCACAAAAGGGTCTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATG 1021907 Query 60223 GCAGCCAAACTGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTA 60282 | |||| || | || || | ||| | | || || ||||| || |||||||| Sbjct 1021908 TCTCTTAAACAAGCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTT 1021967 Query 60283 TCCGATCCGTTCTTTTACTTTCACGATACGGATAAACGAAAGAT--TTTTGTAGATTCTG 60340 | ||||| ||||| | | ||||| | || | | | || |||| || || ||||||| Sbjct 1021968 GCAGATCCCTTCTTCTTC-TTCAC-AGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTG 1022025 Query 60341 TCGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTC 60400 | || || || ||||| ||||| || ||||||||||| || ||||| ||||| || | Sbjct 1022026 TGAAAGATTTCCTTCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCC 1022085 Query 60401 CCGGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAACGTACA 60460 | ||||| || || || ||||| || | ||| | || || | || || | || | Sbjct 1022086 CTGGCGGTAAGGGAGCTAATCCAGACCTTGGC-AGTCCCAA---GGACG-GAGATGTTTA 1022140 Query 60461 CCAT--TCTGTTGAAAGATTTACGCGAGGCGCTAGATCGATTAACCCT--CGAAACGAAT 60516 | | | |||| || || || || | | || || ||| | |||| || Sbjct 1022141 CGTTGAATTAATGAAGGAATTGCGTGAAATG-TTGAACG----ACCTTTCCGAAGAGACC 1022195 Query 60517 CGAACG---TACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTC 60573 | | | |||||| ||||| || ||||| || || || || || || ||| Sbjct 1022196 GGTAAGAAATACGAGCTGACCTCTGCTATTAGTGCTGGATGGGATAAGATTCAAGTTGTC 1022255 Query 60574 GACTACACCGCTGCTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAA 60633 || |||| | ||||| | || | || || || | |||| ||||| || ||| Sbjct 1022256 GATTACAGTGAGGCTCAGAAGTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAA 1022315 Query 60634 GGAGCCTGGTCGAATAACGAT---CTGGGCTATCAGACTACTCTATACGCTCCTTCGTTT 60690 || |||||||| ||||||| || || |||||||| | || |||||||| | | Sbjct 1022316 GGCGCCTGGTC---TAACGATACCCTCGGTCATCAGACTCCGCTTTACGCTCCCGCTTGG 1022372 Query 60691 AATCCTAAAGAACATTATACTACCGATTTTGCCGTTCGTGCTCTACTCAAGCAAAAAGTC 60750 || ||||| ||| ||| || || || |||| || | | || ||| ||| Sbjct 1022373 AACCCTAAGGAAACTTACACAACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGTGTC 1022432 Query 60751 GAGAATaaaaaaaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGC 60810 | ||| || ||| | || || || || |||||||| |||||||||||||| || | Sbjct 1022433 AACCCTAAGAAGATTGTGGTGGGTGTAGCTATGTACGGACGCGGCTGGACCGGTGTCCAC 1022492 Query 60811 GATTTTGTTGACGATAATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACA 60870 ||| || ||||||||||| || | || | || | ||||| |||||||| || Sbjct 1022493 AATT---ACGAAGATAATAATCCCTTCACAGGCAACGCGACAGGACCTGTCAAAGGTACT 1022549 Query 60871 TGGGAAGACGGAGTCGTCGACTATAGAGAGATTTTCAATAATTTCGTCGCCAATAACCCG 60930 ||| ||||||| || || || || ||||| || ||| | ||| | || Sbjct 1022550 TGGCAAGACGGTGTAGTTGATTACAGAGAAATAGCAAATGAAATCG----CTATGGGGAA 1022605 Query 60931 ATGGAA----TATTACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGACCGG 60986 |||| | |||| ||| |||||| |||| | ||||| || | ||||| || Sbjct 1022606 ATGGGAGTTCCATTATGATAACGTTGCCGAAGCTCCTTACGTGTTCAGGCCATCGACTGG 1022665 Query 60987 CGAGCTCATCACTTACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGA 61046 || | || || ||||| |||||||| ||| | | || |||| || ||||| | Sbjct 1022666 TGACTTAATAACGTACGATAATCCTCGATCGACTATTGAGAAAGGCAAGTATGTGAGAAA 1022725 Query 61047 CTATAGCTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTACTTCTAAA 61106 | ||| |||| ||||| ||||| |||||||| || || ||||| || ||| |||| Sbjct 1022726 CAATAAGCTGGGCGGTTTATTCGCGTGGGAGATTGATGCAGACAATGGTGAACTATTAAA 1022785 Query 61107 CGCCATGAACAGCGGTCTCGG 61127 ||||||||||| |||||||| Sbjct 1022786 CGCCATGAACATGGGTCTCGG 1022806 >seq5346 Length=541963 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | |||||||| |||||||| ||||| | ||||| | ||||| ||| | Sbjct 231236 CATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTC 231295 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| ||| | |||||| || || |||||||| || || || || || || Sbjct 231296 TGATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCA 231355 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||||| || | | || |||||| | ||||| |||| | | | |||||| || Sbjct 231356 ACAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAA 231415 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 ||||||||||||| || | ||||| || |||||||| |||||||| || Sbjct 231416 TATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGGTAA 231466 >seq2115 Length=629047 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | |||||||| |||||||| ||||| | ||||| | ||||| ||| | Sbjct 361008 CATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTC 360949 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| ||| | |||||| || || |||||||| || || || || || || Sbjct 360948 TGATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCA 360889 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||||| || | | || |||||| | ||||| |||| | | | |||||| || Sbjct 360888 ACAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAA 360829 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 ||||||||||||| || | ||||| || |||||||| |||||||| || Sbjct 360828 TATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGGTAA 360778 >seq1114 Length=8361563 Score = 114 bits (126), Expect = 1e-20 Identities = 176/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 ||| || || ||||| |||| | || |||||||| | || || ||| | || ||| | Sbjct 2710281 TTTACAGTTTAACAA--TGCAGATCTTCGTAAAAACCCTTACGGGTAAAACCATAACGTT 2710338 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 || || |||||| || |||||||| | |||||| |||||| || |||||||| Sbjct 2710339 AGAGGTTGAAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGG 2710398 Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--A 25336 || || || |||||||||||| | || | || ||||||||| | ||||||| | Sbjct 2710399 CATTCCACCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTAC 2710458 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | |||| ||| ||||| || || || ||||| || |||| || ||||| || | || Sbjct 2710459 ATTGTC--CGACTACAACATCCAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGA 2710516 Query 25397 GGAGGAAA 25404 ||||| || Sbjct 2710517 GGAGGTAA 2710524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 246/376 (65%), Gaps = 5/376 (1%) Strand=Plus/Plus Query 137032 GTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 ||||| || || || || || || || || || || ||||| || | ||||| ||||| Sbjct 3014042 GTGAATGGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGATGCTGTAGGCATT 3014101 Query 137092 TAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTC 137151 ||| | || | ||| || || | || ||| ||| | || || || | | | Sbjct 3014102 GGAGCTAATAAAAGTGAGTTGCGAAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGAC 3014161 Query 137152 CAGTTCCACAGATT-GTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCG 137210 |||| ||| |||| ||| || ||| ||| ||||| ||| | || || | || | Sbjct 3014162 CAGTCCCATAGATCAGTTGGA----GTTTTATCCCACATGTCATATTGTAAGATGCCTTG 3014217 Query 137211 ACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACT 137270 |||| |||||| || |||| | | ||| ||| | || |||||||||| ||| Sbjct 3014218 GCTTGTTGGACTTCCTTCATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACT 3014277 Query 137271 CTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTC 137330 ||| ||| || || || ||||||||| |||||| | || | || | ||||| Sbjct 3014278 GGCCTCTAATGCTCCGTAATATATAGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTC 3014337 Query 137331 TTGGCTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGAT 137390 || || || || || || ||||| | || | ||| || | ||||| | || || Sbjct 3014338 TTCACTTTCATATGGAATGCGCAATAGTACAAATGTATCAGCTAAACCTTGCACTCCAAT 3014397 Query 137391 ACCGATAGGTCTGTGT 137406 ||| |||||||||||| Sbjct 3014398 ACCTATAGGTCTGTGT 3014413 >seq1358 Length=322254 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 25211 ATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGAT 25270 ||||| | ||||| ||| | |||||||| ||| | |||||| || || ||| Sbjct 4 ATCACTTTGGAAGTAGAACCTTCTGATACTATTGAGAATGTAAAAGCCAAGATCCAAGAT 63 Query 25271 AAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 25330 || || || || || || || || || ||||| || | | || |||||| | ||||| Sbjct 64 AAGGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAAGAC 123 Query 25331 GATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 |||| | | | ||||| ||||||||||||||| || | ||||| || |||||| Sbjct 124 AATAGGACTTTATCTGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGA 183 Query 25391 TTGAGAGGAGGAAA 25404 || |||||||| || Sbjct 184 TTAAGAGGAGGTAA 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445063399175040