Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq3133 129 5e-25 seq5346 113 4e-20 seq2115 113 4e-20 seq2310 86.0 5e-12 >seq3133 Length=7630298 Score = 129 bits (142), Expect = 5e-25 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 99851 ATGTCCGGCCCCGTGCACCCTAAATACGGCACTAAATCTGCACGTTTAGAAACTTTTGTG 99910 ||| ||||||||||||||||| |||| | | | | || || | || || Sbjct 2611637 ATGCCCGGCCCCGTGCACCCTCGCTACGCCTCCGAGGCGGCGCGCCTCCGCACCTTCAAA 2611696 Query 99911 GATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTAC 99970 || ||||||| | | || || ||||| ||| | |||| || ||||| || | ||| Sbjct 2611697 GACTGGCCGCGCTGCATGCGGCAGAAACCCGAGGAGCTGGCGGAGGCCGGCTTCTTCTAC 2611756 Query 99971 ACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAA 100030 |||||| | || |||||| ||||| || | ||||||||||||||||| |||||||| Sbjct 2611757 ACCGGCCACGGGGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGAG 2611816 Query 100031 AGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGCGG 100090 | | ||||| |||||| | | ||||| || ||||| || |||||| | ||||| | | Sbjct 2611817 AACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCAG 2611876 Query 100091 CTTGTAAAGGGTTACGACTACGTGCA 100116 || || || || ||||||||| || Sbjct 2611877 CTGGTGAAAGGCCGCGACTACGTACA 2611902 Score = 102 bits (112), Expect = 7e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 99637 CAACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGA 99696 |||||| || || || | || |||| ||||| || |||||||| || || ||||| || Sbjct 2611402 CAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTCTGTAAAGTCGA 2611461 Query 99697 AATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCA 99756 ||| ||||||||| |||||||||||||||| || || || | || ||||| ||||| Sbjct 2611462 AATCATGCGCTGGGTGGAGGGCGACGACCCCGCGAAGGACCACCAGCGCTGGGCCCCGCA 2611521 Query 99757 ATGCCCGTT 99765 |||||| || Sbjct 2611522 ATGCCCCTT 2611530 >seq5346 Length=541963 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || ||||| || || ||||| || || ||||| |||||| Sbjct 231237 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 231296 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| || || || |||||||| | || || ||| Sbjct 231297 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 231356 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || ||||| | ||| || |||||||| ||||| || ||| | |||||| || Sbjct 231357 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 231416 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||| |||||||||||| || || || ||| ||||||| Sbjct 231417 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 231463 >seq2115 Length=629047 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || ||||| || || ||||| || || ||||| |||||| Sbjct 361007 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 360948 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| || || || |||||||| | || || ||| Sbjct 360947 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 360888 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || ||||| | ||| || |||||||| ||||| || ||| | |||||| || Sbjct 360887 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 360828 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||| |||||||||||| || || || ||| ||||||| Sbjct 360827 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 360781 >seq2310 Length=6428792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||||||||| || ||||||||||||||||| || |||| ||||| Sbjct 5745504 ATGCAAATTTTTGTTAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCTTCA 5745563 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| || || || || ||||| | ||| || || Sbjct 5745564 GATACCATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAG 5745623 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||| | || || | ||| || ||||| || || ||| | | ||| | ||||||| Sbjct 5745624 CAACGTCTCATCTTTGCCGGTAAACAGTTGGAGGATGGACGTACACTCT--CTGATTACA 5745681 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||| || || ||||| ||||| || || |||||| | | ||||| ||| Sbjct 5745682 ACATTCAGAAGGAATCCACACTCCACTTGGTATTGCGTCTGCGAGGTGGA 5745731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || ||||||||||||||||| ||| | || |||||| Sbjct 5746416 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTGGAACCCTCA 5746475 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||||| ||||| | || || || Sbjct 5746476 GACACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5746535 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||| | || || | || |||||||| |||||||| || | ||| | |||||||| Sbjct 5746536 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCT--CCGATTACA 5746593 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTA 106469 |||| || || ||||| ||||| || || ||| Sbjct 5746594 ACATTCAGAAGGAATCCACACTCCACTTGGTA 5746625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402302278299776