Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2310 118 1e-21 seq1114 107 2e-18 >seq2310 Length=6428792 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | ||| ||||| |||| ||||||||||| || ||||| Sbjct 5745238 TCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAG 5745179 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| | ||||||||| | || | || |||||||| ||| |||||| || | | | Sbjct 5745178 ATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGAT-TTTTGCTTTGACATT 5745120 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | |||||| || | ||||| ||||| || ||||| || || || Sbjct 5745119 TTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGAC 5745060 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 5745059 AAAGATCTGCAT 5745048 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| |||| || |||||||| || ||||| || | | || || | || || Sbjct 5745485 CACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTC 5745426 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||||||||| || | || ||||| || | |||| || ||||||| | | Sbjct 5745425 GAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGT-CTT 5745367 Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 || ||| || || | | || | | ||||| | ||| ||||| | ||||| |||| Sbjct 5745366 GAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTTT 5745307 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||| || |||||||| |||||||| Sbjct 5745306 TGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||||| | || || | || || ||||| || || || || Sbjct 5746606 TCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAG 5746547 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | || |||||||| | ||| | | ||||||| | ||| ||| || || | | | Sbjct 5746546 ATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGT-CTTGAATTTTGGCTTTAACATT 5746488 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||||||||| | ||||| || || || ||||| || ||||| Sbjct 5746487 CTCAATGGTGTCTGAGGGTTCCACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 5746428 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 5746427 AAAGATCTGCAT 5746416 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||||| | || || | || || ||||| || || || || Sbjct 5745922 TCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAG 5745863 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | || | | |||||||| |||||| || | | | Sbjct 5745862 ATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTC 5745803 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||||||||| | ||||| || || || || || || |||||| Sbjct 5745802 TCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACA 5745743 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 5745742 AAGATCTGCATTC 5745730 >seq1114 Length=8361563 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||| || || || | |||||||||||| || | || ||||| || |||||||| || Sbjct 2710525 ATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTC 2710466 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 || ||| || || | || |||| ||| || || || || ||||| | ||||| || | Sbjct 2710465 GGACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGG 2710406 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATT 35684 |||| || ||| |||| | ||| ||| || || | | || | | ||||| | || Sbjct 2710405 TGGAATGCCCTCTTTGT-CTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTT 2710347 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 | ||||| | ||| || ||||||||||| | ||||| || || ||||||||| Sbjct 2710346 CAACCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATT 2710294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450762202225760