Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1390 304 1e-77 seq1673 295 5e-75 seq4120 98.7 8e-16 >seq1390 Length=76047 Score = 304 bits (336), Expect = 1e-77 Identities = 583/853 (68%), Gaps = 20/853 (2%) Strand=Plus/Plus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 || || ||| ||||||| || || ||| | ||||||||| |||| | || |||||| Sbjct 54226 TTCCCTATTAAATATCACGATATCTGGAAGATGTACAAACAAGCCGAATGTTCTTTTTGG 54285 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAA 43828 || || |||||||||||| | | || ||| |||||| | |||| |||| | Sbjct 54286 ACCGCTGAAGAAGTTGATCTTTCAGCCGATTTATATGATTGGAACTCTTTAACACCAGAT 54345 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||| | | ||| | || || | || ||||| ||||| || || || || ||| Sbjct 54346 GAAAGATACTTTGTTTCACATATTCTTGCATTTTTCGCTGCTTCTGATGGTATTGTAAAT 54405 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT-CAATTACCAGAAGCACGATGTTTTTA 43947 ||| | ||| ||||| | | ||||| | ||| ||| ||| ||||||||| Sbjct 54406 ATGAATCTTGTTGAAAGGTTTTCCGAGGAAGTCACCATTTT-AGAGGCAAAATGTTTTTA 54464 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| || || | | || |||||||| ||||| |||||||| | | || |||||||| Sbjct 54465 TGGATTCCAGGTAGTTATCGAAAATATCCATTCTGAAATGTATTCTTTACTTATAGATAC 54524 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067 ||| || | ||| | |||| || ||| | ||||||| ||| | ||| |||| | Sbjct 54525 GTATATTAGTGATCCGGACGAAAAAAATCATCTTCTTAATGCTATAAACACAATACCATC 54584 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT--TTTGGA 44125 |||||| | || || || ||||| | ||||||||||| || | ||| ||| | Sbjct 54585 TATTAAAAAGAAGGCTGATTGGGCATTGAAATGGATAAAAGACAAAAAATCTACTTTTGC 54644 Query 44126 GAAC-GACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 | | || || |||| ||||| ||| ||||| ||||||||| ||| | ||||| | Sbjct 54645 TACCAGAGTTATCGCATTTGCTTGTGTCGAAGGAATTTTCTTTAGTGGAGCATTTGCTTC 54704 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || || |||||||||||| ||||| | |||||||| ||| ||||||||||||| | || Sbjct 54705 GATCTTCTGGTTAAAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTCAAATGAACTCAT 54764 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGA 44304 || || |||||||| | |||||||| |||||||| |||||| | | ||||| Sbjct 54765 TAGCCGAGATGAAGGTCTGCATTGCGAATTTGCTTGTTTGTTAAATAGTTATCT---TAT 54821 Query 44305 CGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACA 44364 | |||| ||| | | || | ||||||||||| ||||||||||| || ||||| Sbjct 54822 CAATAA------ATGCGATAAGATCAAGGATATTGTTGTTGAGGCAGTAAAAATCGAACA 54875 Query 44365 AGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT---GAACTTTTGAT 44421 ||||||| | | | |||||||| ||| | || ||||||||| ||||| || Sbjct 54876 AGAATTTTTAAGTGAAAGTTTACCTGTTAATCTTATTGGAATGAATTGCAAACTT---AT 54932 Query 44422 GAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACA 44481 | | | |||||||||| | || || | ||| | | | || || ||||| Sbjct 54933 GTGCAATTATATTGAATTTGTAGCCGACAGATTATTGATAAACCTTGGGGAAGATAAGAT 54992 Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 || | | || || || ||||| |||||||||||||| | | || |||||||| Sbjct 54993 TTACAACACAGCCAATCCTTTCGATTTCATGGAAAATATTTCACTTGTTGGTAAAACAAA 55052 Query 44542 CTTTTTTGAAAAA 44554 ||| ||||| ||| Sbjct 55053 CTTCTTTGACAAA 55065 >seq1673 Length=160240 Score = 295 bits (326), Expect = 5e-75 Identities = 581/853 (68%), Gaps = 20/853 (2%) Strand=Plus/Minus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 || || ||| ||||||| || || ||| | ||||||||| |||| | || |||||| Sbjct 45560 TTCCCTATTAAATATCACGATATCTGGAAGATGTACAAACAAGCCGAATGTTCTTTTTGG 45501 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAA 43828 || || |||||||||||| | | || ||| |||||| | | |||| |||| | Sbjct 45500 ACCGCTGAAGAAGTTGATCTTTCAGCCGATTTATATGATTGGAATTCTTTAACACCAGAT 45441 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||| | | ||| | || || | || ||||| ||||| || || || || ||| Sbjct 45440 GAAAGATACTTTGTTTCACATATTCTTGCATTTTTCGCTGCTTCTGATGGTATTGTAAAT 45381 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT-CAATTACCAGAAGCACGATGTTTTTA 43947 ||| | ||| ||||| | | ||||| | ||| ||| ||| ||||||||| Sbjct 45380 ATGAATCTTGTTGAAAGGTTTTCCGAGGAAGTCACCATTTT-AGAGGCAAAATGTTTTTA 45322 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| || || | | || |||||||| ||||| |||||||| | | || |||||||| Sbjct 45321 TGGATTCCAGGTAGTTATCGAAAATATCCATTCTGAAATGTATTCTTTACTTATAGATAC 45262 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067 ||| || | ||| | |||| || ||| | ||||||| ||| | ||| |||| | Sbjct 45261 GTATATTAGTGATCCGGACGAAAAAAATCATCTTCTTAATGCTATAAACACAATACCATC 45202 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT--TTTGGA 44125 |||||| | || || || ||||| | |||||||| || || | ||| ||| | Sbjct 45201 TATTAAAAAGAAGGCTGATTGGGCTTTGAAATGGATTAAAGATAAAAAATCTACTTTTGC 45142 Query 44126 GAAC-GACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 | | || || |||| ||||| ||| ||||| ||||||||| ||| | ||||| | Sbjct 45141 TACCAGAGTTATCGCATTTGCTTGTGTTGAAGGAATTTTCTTTAGTGGAGCATTTGCTTC 45082 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || || |||||||||||| ||||| | |||||||| ||| ||||||||||||| | || Sbjct 45081 GATCTTCTGGTTAAAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTCAAATGAACTTAT 45022 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGA 44304 || || |||||||| | |||||||| |||||||| |||||| | | ||||| Sbjct 45021 TAGCCGAGATGAAGGTCTGCATTGCGAGTTTGCTTGTTTGTTAAATAGTTATCT---TAT 44965 Query 44305 CGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACA 44364 | |||| ||| | | || | ||||| ||||| ||||||||||| || ||||| Sbjct 44964 CAATAA------ATGCGATAAGATCAAGGATATCGTTGTTGAGGCAGTAAAAATCGAACA 44911 Query 44365 AGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT---GAACTTTTGAT 44421 ||||||| | | | ||||| || ||| | || ||||||||| ||||| || Sbjct 44910 AGAATTTTTAAGTGAAAGTTTACCAGTTAATCTTATTGGAATGAATTGCAAACTT---AT 44854 Query 44422 GAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACA 44481 | | | |||||||||| | || || | ||| | | | || || ||||| Sbjct 44853 GTGCAATTATATTGAATTTGTAGCCGACAGATTATTGATAAACCTTGGAGAAGATAAGAT 44794 Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 || | | || || || |||||||||||||||||||| | | || |||||||| Sbjct 44793 TTACAACACAGCCAATCCTTTCGATTTTATGGAAAATATTTCACTTGTTGGTAAAACAAA 44734 Query 44542 CTTTTTTGAAAAA 44554 ||| || || ||| Sbjct 44733 CTTCTTCGACAAA 44721 >seq4120 Length=16292344 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| ||||||||||| || || ||||| ||||| ||| | || || ||| Sbjct 7436574 GTTTTGGCATTTTTTGCTGCTTCTGATGGTATAGTTAATGAGAATCTAGTAGAGCGATTT 7436515 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | |||||||||||| | |||||| | | |||||||| || |||||||| || || Sbjct 7436514 TCACAAGAAGTTCAAATTGGTGAAGCAAGGTTCTTTTATGGATTCCAAATTGCTATGGAG 7436455 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||| | || || || |||||| | ||||| ||||| ||||| Sbjct 7436454 AATGTACACTCTGAGATGTACTCCTTGCTGATTGATACTTACAT 7436411 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 |||||||||| | || ||| | || || || ||||||| ||| || ||||||||||| Sbjct 7436844 AGAAAATCCGCGCCGATTCGTCATCTTCCCCATCCAATATCCTGATATCTGGCAAATGTA 7436785 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTT 43788 |||||| || | || ||||| ||||| | ||| ||||||||||| Sbjct 7436784 CAAAAAGGCTGAAGCTTCATTCTGGACTGTAGAGGAAGTTGATTT 7436740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429009259860