Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1390 86.0 2e-11 >seq1390 Length=76047 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 443716 TCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGG 443775 |||| |||||| ||||||||| | || ||||| || ||| || || || ||||||||| Sbjct 54656 TCGCATTTGCTTGTGTCGAAGGAATTTTCTTTAGTGG-AGCATTTGCTTCGATCTTCTGG 54714 Query 443776 TTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGAC 443835 || || || | || || |||| ||| || | ||| || ||||| || || || || Sbjct 54715 TTAAAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTCAAATGAACTCATTAGCCGAGAT 54774 Query 443836 GAGGGTTTGCATTGCGACTTCGCCTGT 443862 || ||| |||||||||| || || ||| Sbjct 54775 GAAGGTCTGCATTGCGAATTTGCTTGT 54801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588222606707540