Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1114 172 7e-38 seq3160 143 3e-29 seq2352 91.5 2e-13 seq1673 91.5 2e-13 >seq1114 Length=8361563 Score = 172 bits (190), Expect = 7e-38 Identities = 478/723 (66%), Gaps = 25/723 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||||| |||| ||||||||||| | |||||||| || ||||||||||| || | Sbjct 3014028 GGTAAATGTTTGATGTGAATGGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAG 3014087 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG---ATGC 110822 | ||||| |||||||| || | ||||| ||| ||||| ||| | | ||| || Sbjct 3014088 ATGCTGTAGGCATTGGAGCTAATAAAAGTGAGTTGCGAAG-CCCATGT--TTGGCAATTT 3014144 Query 110823 GTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTG-GTTTCACCTTCCCACATGTCAA 110879 ||| || | |||| ||||| | ||| | || | | |||| | |||||||||||| Sbjct 3014145 TTTCTTTTAAAACAGACCAGTCCCATAGATCAGTTGGAGTTTTA---TCCCACATGTCAT 3014201 Query 110880 ACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT 110939 | || | | |||||| | ||| || ||| | || ||| || | || Sbjct 3014202 ATTGTAAGATGCCTTGGCTTGTTGGACTTCCTTCATATGTACTATAAACTCCCTCTTTTT 3014261 Query 110940 CAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999 |||| |||||| || ||||| | | | ||| ||| || ||||| ||||| | | Sbjct 3014262 GCGCCAGTTCACAACTGGCCTCTAATGCTCCGTAATATATAGTTTCGAAGATTTGTTGGT 3014321 Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 111059 | | | | ||||| || ||| ||| ||| | | | |||| ||| || | Sbjct 3014322 TAAGTTTAATTGCTTCTTCACTTTCATATGGAATGCGCAATAGTACAAATGTATCAGCTA 3014381 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTCT 111116 |||||| || || | ||| ||||||||||||||||| ||||| |||| ||| | Sbjct 3014382 AACCTTGCACTCCAATACCTATAGGTCTGTGTCGCATGTTAGAGTTCTTTGCTTCAGGC- 3014440 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 || || |||||||| ||||| | | || || |||| || | ||||||| | Sbjct 3014441 --ACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTTTGTGTGATCGTCTTTGTAA 3014498 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 ||| | | ||| | | | | || | |||||||||||| || | | | Sbjct 3014499 CTTCTTTCAACTTTGTAAAGTTGTATGT---TTTATCTTCATTGACAAACCTGTTTAATG 3014555 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATTTC 111294 | ||||| || ||||| ||||| || ||||| || | |||||||| | |||||| Sbjct 3014556 CAATTGAAGCTAAATTACAAACTGCAACTTCATCTGCTGA--AGTGTACTCAACAATTTC 3014613 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 ||| || || || | ||||| || || | ||| ||||| ||||| || |||| || Sbjct 3014614 TGTGCACAAATTACTGCATTTAATTGTGCCAAGATTTTTTTGATTACTTTTTCTGTTACA 3014673 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 | ||| ||||| |||||||| || || || || ||| |||| || | || || || Sbjct 3014674 TGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCCACTTGTGCTTCTATTATTGCTTT 3014733 Query 111415 CCA 111417 ||| Sbjct 3014734 CCA 3014736 >seq3160 Length=451458 Score = 143 bits (158), Expect = 3e-29 Identities = 769/1221 (63%), Gaps = 27/1221 (2%) Strand=Plus/Plus Query 110362 TCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGA 110421 ||| ||||||||||| || ||||| || ||||||||||| |||| | |||||| || || Sbjct 143373 TCGAAGATAGTACATTCCAGTCTTAAGACCTTGTTTCCAACCGTAGAAATGCATCGATGA 143432 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA 110481 | | || | || | | | |||| |||| | ||| |||||| | || Sbjct 143433 TAAAGTTGAGTAGGAAGGTGTGGCTAAAAAGATATTCAGAGACTGAGATTGGTCTACAAA 143492 Query 110482 GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCG 110541 | | | | || || | ||||| ||| |||||| || || ||||||||||| Sbjct 143493 GTGTTGTCTATCCGCGGCTAAGTCAATAACACTCTTCATTTTTATCTCCCAAACTGTTTT 143552 Query 110542 ATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTT 110601 ||| ||||| || || || ||| || || ||||||||| || ||||| | Sbjct 143553 ATAAAGATTTTTAATCTCGAGTGGTATTGATGGGATATTCTGAATAGAACCATCATGTGC 143612 Query 110602 CACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAG 110661 | || | || ||| | ||| |||||| | | || | | | || || | ||| Sbjct 143613 TATAATTAAATTCTTAAGTTCCAAGGACCATAATCTAAGATCAATCAAATCTTTCATGAG 143672 Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721 | || ||||| || || ||||| || |||||||| ||| ||||| | || Sbjct 143673 ATATTTATTGACCATTTGGAAGTCACCAGCTGATGTTCTTCTTGAGTAAATGTTACTAGT 143732 Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 | ||||||||| ||| || |||| || ||||| | || || || ||||| || Sbjct 143733 AAAAGGTTCAAAGGCTTCGTTGTTACTAAAAATTTGAGAAGTACCAGCAGTAGGCATGGG 143792 Query 110782 TGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCA 110841 | || ||||| ||||||| || | || || ||| | | ||| ||||| Sbjct 143793 AGAAATTAAAAGTGAATTACGAACTCCGTATGTTTTTATATTTTCTCTTAAAACTTCCCA 143852 Query 110842 GTCG----TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 ||| || |||| ||||| ||| | |||| || | || | | ||||| Sbjct 143853 GTCCCATCTACTTGA---TGGTTGT-CCTCCTGACATTTCCCAGTGGAAGATGCCTTGAC 143908 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 110957 || ||||| ||| | |||||||| | ||| ||| || ||| |||||| | Sbjct 143909 TAATTGGTGAACCTTCATATGTTTCATAAGGACCATGGATTTTAGCTTCTTCACAAGATG 143968 Query 110958 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 111017 | || || | ||| | ||| | |||||||||||| || | || | ||||| | Sbjct 143969 CTTCTAGTGCTGCATAATAAAGTGTTTCAAAGATATCTTTGTTTAATTCTCTTGCTTCTT 144028 Query 111018 CTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAAC 111077 || ||| | | ||| | ||||||||| || || || |||| ||||| || Sbjct 144029 TACTTTCGTATGGTAATCTCAACATTACAAATACATCAGCTAGTCCCTGAATACCCAGAC 144088 Query 111078 CAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGT 111137 ||| || || || | ||||||| | | || | || ||||| | ||| | Sbjct 144089 CAACGGGCCTATGAGTCTTATTAGAATATTCAGCTTCTTTAAGAGGATAGATATTATGAT 144148 Query 111138 CAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT 111197 ||||||||| ||| | ||| || || || || ||| | | | || | |||| ||| Sbjct 144149 CAATGACTCTGTTAACATTCTTAGTGACTATTTTTACAACATTTTTAAATAATTCAAAAT 144208 Query 111198 CAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAA 111257 |||| | | || |||| || |||||||||| ||| ||| ||||| |||| Sbjct 144209 CAAACTGACCATTCG--TCAT-GA---ACTTTGGAAGACAGATACTTGCTAAATTACAAA 144262 Query 111258 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAA 111317 |||| ||| | |||||| | | || |||| |||||||||||| || | | Sbjct 144263 CAGCTACTTCAGTTGGACTTGTGTATTGAATTATCTCTGAACATAAGTTGGATGTCCTTA 144322 Query 111318 TCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGG 111377 | || || | ||||||||| ||||| | || | ||| || || | ||| || | Sbjct 144323 TTGTACCAAGATTCTTTTGATTACTAAGATGATTAATCCTATCTTTATACATCATATAAG 144382 Query 111378 GCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACA- 111436 | || || ||||| | || |||| | |||||| ||||| || | |||||| ||| Sbjct 144383 GAGTACCTGTCTCAATTTGAGATTCAATAATAGCTTTCCACACTTTTTGGGCTGGAACAA 144442 Query 111437 -ATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 111495 | | || | ||| || ||||| ||| | || | |||||||| |||||| Sbjct 144443 CAACTCTTTCAACAGTCTCT-----TCGTAATTTATATACATTTTTTCAAACTTCTCACC 144497 Query 111496 CACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 || || || |||||||| || |||| ||||| || | |||||||| | || Sbjct 144498 ATAAGCATCAGAAAGACCTGGAACTGACTTG---GGACAAAATAAAGACCATTCATCATT 144554 Query 111553 TTCCTCAACCCGCTTCATGAA 111573 | ||||| | ||||| || Sbjct 144555 ATTTTCAACTCTTTTCATAAA 144575 >seq2352 Length=6838751 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || ||||||||||| |||||||| || | ||| || || || || || || || | Sbjct 5358185 CCGACCGCATCAATTTCATCAATAAAAAGAATGCAAGGAGCATGTTTACGTGCCATAGAA 5358244 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| ||||| || | ||| |||||||||||||| |||| ||| | || || Sbjct 5358245 AACATATCCCGAACTCTAGAAGGACCAACACCAACAAACATTTCCAAAAATTCTGAACCA 5358304 Query 11744 GAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 || ||| | |||||||| ||||| | ||||| || | ||| || || | ||||| Sbjct 5358305 GA-CACCGTAATGAATGGAACATTAGCCTCACCAGCTGTTGCTTTAGCCAGTAACGTCTT 5358363 Query 11803 TCCCGTACCTGG 11814 ||||||||| || Sbjct 5358364 TCCCGTACCAGG 5358375 >seq1673 Length=160240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 |||||||| || ||||| ||||||||| ||||||||||||||| || | | ||| Sbjct 44989 GCAAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCA 45048 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| | ||||| ||||| | || | ||| |||| || ||||| || Sbjct 45049 GGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCA-AATGCTCCACTAAAGAAAAT 45107 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 || || ||||| ||||| || | || | || || | ||| ||| ||| Sbjct 45108 TCCTTCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAG---TAGATTTTTTATCTTT 45164 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTA 122878 || |||||||| ||||| | |||||||| | |||| |||||| Sbjct 45165 AATCCATTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTA 45208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627988257571200