Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1114 116 5e-21 seq1673 87.8 2e-12 seq1390 82.4 9e-11 >seq1114 Length=8361563 Score = 116 bits (128), Expect = 5e-21 Identities = 451/704 (64%), Gaps = 25/704 (4%) Strand=Plus/Plus Query 118173 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 118232 ||||| | || || || | ||| |||| |||||| ||||||| || || |||||||| Sbjct 3014021 CGTCTTTGGTAAATGTTTGATGTGAATGGTTCAAAGGACTCATTATTTCCTAAGATTTGT 3014080 Query 118233 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTA 118292 ||||| || ||||| ||||| || || | | ||| ||| || || || | || | Sbjct 3014081 GCTGTAGATGCTGTAGGCATTGGAGCTAATAAAAGTGAGTTGCGAAGCCCATGTTTGGCA 3014140 Query 118293 ATGCGTTCCTTGAGAGCGTCCCAGTCG--TAGTTGAGCT----TTGTCTCCCCCTGCCAC 118346 || ||| || | | | |||||| ||| | || | || | |||| || Sbjct 3014141 ATTTTTTCTTTTAAAACAGACCAGTCCCATAGATCAGTTGGAGTTTTATCCC------AC 3014194 Query 118347 ATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCC 118406 || ||| | || | ||| |||||| | ||| ||| ||| |||| ||| ||| Sbjct 3014195 ATGTCATATTGTAAGATGCCTTGGCTTGTTGGACTTCCTTCATATGTACTATAAACTCCC 3014254 Query 118407 TCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATG 118466 || | ||||| ||| | || ||||| | ||| ||| ||| || ||||| || || Sbjct 3014255 TCTTTTTGCGCCAGTTCACAACTGGCCTCTAATGCTCCGTAATATATAGTTTCGAAGATT 3014314 Query 118467 CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACA 118526 | || | | | || || || ||| | | | || | | | |||| | Sbjct 3014315 TGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAATGCGCAATAGTACAAATGTA 3014374 Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || | |||||| || || | || || || | |||| ||| ||||| ||| || Sbjct 3014375 TCAGCTAAACCTTGCACTCCAATACCTATAGGTCTGTGTCGCATGTTAGAGTTCTTTGCT 3014434 Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 ||| || |||||||| ||| |||| |||| || |||| |||| |||| Sbjct 3014435 TCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTTTGTGTGATCGTCTTT 3014494 Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT---CTTCATTGACATACTTA 118703 || | ||| | | |||| |||| | || || | ||||||||||| || | Sbjct 3014495 GTAACTTCTTTCAACTTT--GTAA----AGTTGTATGTTTTATCTTCATTGACAAACCTG 3014548 Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTA 118761 | || ||||| || | |||||| || | ||||| || | ||||||||| | Sbjct 3014549 TTTAATGCAATTGAAGCTAAATTACAAACTGCAACTTCATCTGCTGA--AGTGTACTCAA 3014606 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821 |||||| |||||||| || | ||||| ||||| | || |||||||| ||| Sbjct 3014607 CAATTTCTGTGCACAAATTACTGCATTTAATTGTGCCAAGATTTTTTTGATTACTTTTTC 3014666 Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 ||||||| | ||| ||||| ||||||||||| || || || ||| Sbjct 3014667 TGTTACATGAATCTTTGTACAGCATGTATGGTGTGCCTGTTTCC 3014710 >seq1673 Length=160240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 206/310 (66%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 |||||||| || ||||| || || ||| || |||||||| || || ||| ||| Sbjct 44989 GCAAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCA 45048 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| | ||||| |||||||| |||| | ||||| ||| ||||| || Sbjct 45049 GGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATT 45108 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---A 130192 || || ||||| || || || | | | |||||| | || ||| |||| | Sbjct 45109 CCTTCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAG---TAGATTTTTTATCTTTA 45165 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | ||| |||| ||||| | ||||| || | ||| | || | || | || || | | Sbjct 45166 ATCCATTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTA 45225 Query 130253 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312 | || | || ||||| ||||| | || ||| ||||||| ||| ||||| || Sbjct 45226 AGAAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATT 45285 Query 130313 TCGCCATGGA 130322 || ||||| Sbjct 45286 TCAGAATGGA 45295 >seq1390 Length=76047 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || ||||| || || ||| ||||||||||| || || ||| ||| ||||||||||| Sbjct 54785 TGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGCATGAGACCT 54726 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 | ||||| |||||||| |||| | ||||| ||| ||||| || || || ||||| Sbjct 54725 CTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCGACACAA 54666 Query 130148 GCGAACGC 130155 || || || Sbjct 54665 GCAAATGC 54658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618392125988320