Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3121 100 3e-16 seq1390 100 3e-16 >seq3121 Length=9531028 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | ||| |||| |||||||| || ||||||||| || ||||| Sbjct 6648458 GTGAAGATGTAACGCGGGCTAGCCGAGTCCTTGCCGCCGCACAGCCGCGTACCGAACTGA 6648517 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || ||||||| ||| |||| || ||| | |||||||||| |||||| Sbjct 6648518 CCGCGCGGCTCCAGCAGGTTGATGTTATTGGAACCAACGTAGTTCTGAGCCAGATTCACT 6648577 Query 152149 ATCGT 152153 ||||| Sbjct 6648578 ATCGT 6648582 Score = 89.7 bits (98), Expect = 6e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCA-AGACGCGTACCGAAT 117361 ||||||| |||||||| | ||| || | |||||||| || ||| || ||||||||||| Sbjct 6648456 GAGTGAAGATGTAACGCGGGCTAGCCGAGTCCTTGCCGCC-GCACAGCCGCGTACCGAAC 6648514 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 || || | |||||||| ||||| | ||| |||| || || |||| ||||||| || Sbjct 6648515 TGACCGCGCGGCTCCAGCAGGTTGATGTTATTGGAACCAACGTAGTTCTGAGCCAGATTC 6648574 Query 117422 ACAATCGT 117429 || ||||| Sbjct 6648575 ACTATCGT 6648582 >seq1390 Length=76047 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || |||| |||||||||| ||| || | |||||| |||||||| | ||| Sbjct 54797 GCAAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCA 54738 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || || | ||||| ||||| ||||| | | || | ||||| ||||| || Sbjct 54737 GGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATT 54678 Query 74871 CCTTCGACACACGCAAAGGCGACAA 74895 ||||||||||| ||||| |||| || Sbjct 54677 CCTTCGACACAAGCAAATGCGATAA 54653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547177886405600