Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2310 114 8e-21 seq5346 109 3e-19 seq2115 109 3e-19 >seq2310 Length=6428792 Score = 114 bits (126), Expect = 8e-21 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| ||||| || ||||| || || || | ||| || Sbjct 5744809 AGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGT 5744750 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||| |||||||| || || | ||| ||||| || || | ||||| Sbjct 5744749 CCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCT 5744690 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||| | ||||| | ||||||||| |||||| |||| ||| Sbjct 5744689 TTGTCTTGAATCTTG-GCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGT 5744631 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG--ATTGTA 34716 || || || || || || || ||||||||||||||||| ||| |||||| Sbjct 5744630 GATGGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCATCTTGTAATTGTA 5744580 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| ||||| ||||| ||| ||||| |||||||| ||||| || Sbjct 5745730 CCACCTCGCAGACGCAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCAGAG 5745671 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || | |||||||||||||| || | ||| || ||||| || || Sbjct 5745670 AGTGTACGTCCATCCTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 5745611 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| |||| || | |||||| | ||| || ||| || || Sbjct 5745610 ATACCTTCCTTATCTTGGATC-TTGGCTTTAACATTCTCAATGGTATCTGAAGGTTCAAC 5745552 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || || || |||||||| |||||| Sbjct 5745551 CTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATTTGCATG 5745503 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | ||| | |||||| || || || |||||||| || || || || || Sbjct 5745503 GCCTCCTCTCAAACGAAGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGA 5745444 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||| || | ||||| || || ||||| ||||| || | ||| || || || || || Sbjct 5745443 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 5745384 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| ||| | ||| || | ||||||||| | || | Sbjct 5745383 AATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAA 5745325 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || ||||| || || || || ||||||||||||||||| Sbjct 5745324 CCTCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 >seq5346 Length=541963 Score = 109 bits (120), Expect = 3e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||||||| || || || || |||||||| |||||||| || | || | | |||| Sbjct 231448 AAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCT 231389 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||||||||| |||||||| | | ||||||||| || || | ||| || || ||| Sbjct 231388 TCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCT 231329 Query 34615 GTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||||| ||||| ||| || || || ||||||| || || || Sbjct 231328 TGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTC 231269 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || ||||| || || ||||||||||||||| Sbjct 231268 TTTCCTGTTAATGTCTTTACAAAAATCTGCATG 231236 >seq2115 Length=629047 Score = 109 bits (120), Expect = 3e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||||||| || || || || |||||||| |||||||| || | || | | |||| Sbjct 360796 AAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCT 360855 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||||||||| |||||||| | | ||||||||| || || | ||| || || ||| Sbjct 360856 TCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCT 360915 Query 34615 GTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||||| ||||| ||| || || || ||||||| || || || Sbjct 360916 TGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTC 360975 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || ||||| || || ||||||||||||||| Sbjct 360976 TTTCCTGTTAATGTCTTTACAAAAATCTGCATG 361008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314708227106276