Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2310 188 2e-42 seq1114 134 3e-26 seq5346 120 7e-22 seq2115 120 7e-22 seq2352 104 5e-17 >seq2310 Length=6428792 Score = 188 bits (208), Expect = 2e-42 Identities = 164/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || ||||||||||||||||| |||||||| | || || | |||||||| ||||| Sbjct 5746391 GTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAGAGTGTACGACCATCTTCTAGCTG 5746332 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| |||||||| || ||||| ||||| || || | ||||||||||| |||||||| Sbjct 5746331 TTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTT 5746272 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || ||||||||||| ||| ||| || ||||||||||| ||||||||||| Sbjct 5746271 GGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCTTTCCCGT 5746212 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | |||||| Sbjct 5746211 TAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| |||||||| ||||||||||| || |||| || || | ||||| Sbjct 5747083 AGTACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCATCC 5747024 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| |||||||| || ||||| ||||| || || | ||||||||||| Sbjct 5747023 TCCAACTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5746964 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || ||||||||||| ||| ||| || ||||||||||| ||| Sbjct 5746963 TGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTC 5746904 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| | ||||| || || | |||||| Sbjct 5746903 TTTCCCGTTAAGGTCTTAACGAAGATCTGCAT 5746872 Score = 174 bits (192), Expect = 4e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| || ||||| || || || ||||| ||||| | || || | ||||| Sbjct 5745944 TAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATC 5745885 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| ||||| ||||| |||||||| || ||||| ||||| || || | ||||||||||| Sbjct 5745884 TTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTC 5745825 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||| ||| || || ||||||||||||||| ||| |||||||| ||||| || Sbjct 5745824 TTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGT 5745765 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| || | ||||| ||||| | ||||||| Sbjct 5745764 CTTTCCTGTTAAGGTCTTCACAAAGATCTGCATT 5745731 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || | ||| || ||||| || || || ||||| ||||| | || || Sbjct 5746636 CGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTA 5746577 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| | ||| Sbjct 5746576 CGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCT 5746517 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || || || ||| || || || |||||||| ||| ||| ||||| || Sbjct 5746516 TCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACCTCAAGG 5746457 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| ||||| | |||||| Sbjct 5746456 GTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| ||||| ||||| || |||||||| || |||| || || Sbjct 5747320 CGAAGACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTA 5747261 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| |||| ||| ||||| ||||||||||| ||||| ||||| || || | ||| Sbjct 5747260 CGGCCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCT 5747201 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| ||||| || ||| || || ||||||||||| || || ||||| | Sbjct 5747200 TCCTTGTCTTGGATTTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAG 5747141 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| || || | |||||| Sbjct 5747140 GTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || || || |||||||| || || |||| ||| || | |||||| Sbjct 5745487 AGCACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCT 5745428 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||||||| ||||| || || || |||| ||||||||||| Sbjct 5745427 TCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCT 5745368 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || ||||| || ||||| ||| ||||||||| | ||||| || Sbjct 5745367 TGAATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTT 5745308 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 5745307 TTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| || || |||||||| || || | | || | ||| ||| Sbjct 5745259 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCT 5745200 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| || || | ||||||||||| Sbjct 5745199 TCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5745140 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| ||| || ||||| || ||||||||| ||| || || | ||||| || Sbjct 5745139 TGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTT 5745080 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 5745079 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||||||||||||||| || || | || || | |||||| Sbjct 5746171 AGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCC 5746112 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| |||||||| | | || ||||| || || | ||||||||||| Sbjct 5746111 TCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5746052 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||||| ||| || || | || || || Sbjct 5746051 TGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTT 5745992 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 5745991 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||||||||||||||| || || | || || | |||||| Sbjct 5746855 AGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCC 5746796 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| |||||||| | | || ||||| || || | |||||||| || Sbjct 5746795 TCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCT 5746736 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||||| ||| || || | || || || Sbjct 5746735 TGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTT 5746676 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 5746675 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| || || |||||||| || || | | || | || ||| Sbjct 5745031 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCT 5744972 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| | | || ||||| || || | ||||||||||| Sbjct 5744971 TCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5744912 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| ||| || ||||| || ||||||||| ||| || || | ||||| || Sbjct 5744911 TGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTT 5744852 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 5744851 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| || || |||||||| || || | | || | ||||||| Sbjct 5744803 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGTCCATCT 5744744 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| | | || ||||| || || | || || ||||| Sbjct 5744743 TCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 5744684 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| || ||||| || || ||||| | ||||| ||| Sbjct 5744683 TGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 5744624 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| | ||||| ||||| | |||||| || Sbjct 5744623 TTGCCCGTCAAGGTCTTCACAAAAATCTGCATCTT 5744589 >seq1114 Length=8361563 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| || | || | |||||| || || || || |||||||| || || | | || Sbjct 2710515 CGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTA 2710456 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||| ||| ||||| |||||||| | | ||| || || || |||| || Sbjct 2710455 CGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCC 2710396 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || || || ||| || |||||||| ||||||||| ||||||||| | Sbjct 2710395 TCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAAC 2710336 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| || || ||||| || | ||||||| Sbjct 2710335 GTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATT 2710294 >seq5346 Length=541963 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 |||||||| || |||||||| | | ||||| ||||||| || || || || || Sbjct 231427 TCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAAT 231368 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 ||||| | |||||||| ||||| | |||||| || || |||||||| ||| || || Sbjct 231367 ATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTC 231308 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || || || ||||| ||| || || | |||||| |||||||| || | ||||||||| Sbjct 231307 TCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACA 231248 Query 211104 AACACCTGCAT 211114 || | |||||| Sbjct 231247 AAAATCTGCAT 231237 >seq2115 Length=629047 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 |||||||| || |||||||| | | ||||| ||||||| || || || || || Sbjct 360817 TCTTTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAAT 360876 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 ||||| | |||||||| ||||| | |||||| || || |||||||| ||| || || Sbjct 360877 ATAAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTC 360936 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || || || ||||| ||| || || | |||||| |||||||| || | ||||||||| Sbjct 360937 TCAATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACA 360996 Query 211104 AACACCTGCAT 211114 || | |||||| Sbjct 360997 AAAATCTGCAT 361007 >seq2352 Length=6838751 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||| ||||| | ||| ||||| || || ||||| ||| || |||||||||||| Sbjct 482058 TGCTGGTCCGGAGGGATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCGATGGTG 481999 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || ||| |||||||||||| ||||| || || |||||||| || || || || | |||| Sbjct 481998 TCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCTGC 481939 Query 211113 ATTTT 211117 || || Sbjct 481938 ATCTT 481934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159069246689780