Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2310 118 9e-22 seq5346 98.7 9e-16 seq2115 98.7 9e-16 seq1358 91.5 1e-13 >seq2310 Length=6428792 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||||||||| || || ||| ||||||||| ||||||||||||| ||||| || | Sbjct 5746402 CGTAACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAGAGTGTACGACCA 5746343 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||||||||| || || || ||||| |||||||| | ||| | | || ||| Sbjct 5746342 TCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTG 5746283 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || ||| | || | | || ||| | ||||| || | ||||| Sbjct 5746282 TCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATG 5746223 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||||||| | || ||||||||||| ||||| Sbjct 5746222 GTCTTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 >seq5346 Length=541963 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | ||| ||||||||||| || || |||||||| ||||||||||||| Sbjct 231463 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGAT 231404 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || | | ||| || | ||||| || ||||||||||| | ||| ||||| | || Sbjct 231403 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 231344 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || ||| || ||| | || | | ||||| | || || Sbjct 231343 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 231284 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| || | || || ||||| || ||||| Sbjct 231283 TCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | ||| ||||||||||| || || |||||||| ||||||||||||| Sbjct 360781 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGAT 360840 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || | | ||| || | ||||| || ||||||||||| | ||| ||||| | || Sbjct 360841 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 360900 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || ||| || ||| | || | | ||||| | || || Sbjct 360901 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 360960 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| || | || || ||||| || ||||| Sbjct 360961 TCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq1358 Length=322254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | ||| ||||||||||| || || |||||||| ||||||||||| | Sbjct 194 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAGAT 135 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 | || | | ||| || | ||||| || ||||||||||| | ||| ||||| Sbjct 134 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTC 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429516430095236