Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1114 141 6e-29 seq2310 134 9e-27 seq5346 131 1e-25 seq2115 131 1e-25 seq2352 84.2 1e-11 >seq1114 Length=8361563 Score = 141 bits (156), Expect = 6e-29 Identities = 172/233 (74%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 23606 TTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 |||| ||||||||| ||||| |||||||| ||||| ||||| || || | || ||||| Sbjct 2710289 TTAACAATGCAGATCTTCGTAAAAACCCTTACGGGTAAAACCATAACGTTAGAGGTTGAA 2710348 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 || | |||||| | |||| ||||| |||||| |||||||| || | || ||| Sbjct 2710349 GCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCA 2710408 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 ||||| || | || || || ||||||||||| ||||||| | ||| || || ||| Sbjct 2710409 GATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCCGAC 2710468 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| || || || || ||| | || || || || ||| | |||||||| Sbjct 2710469 TACAACATCCAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGAGGAGG 2710521 >seq2310 Length=6428792 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||| | |||||||| || |||||||||||||| || || | Sbjct 5746188 ATGCAGATCTTTGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCC 5746247 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | || | | ||||| |||||| | || ||||| || Sbjct 5746248 GACACCATCGAGAATGTTAAAGCCAAGA-TCCAAGACAAGGAAGGTATCCCCCCAGACCA 5746306 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||||||||| || ||||| | || || | |||||| || Sbjct 5746307 GCAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTATAA 5746366 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||||||||| | || || || ||| | ||||||| || Sbjct 5746367 TATCCAAAAAGAGTCCACCCTCCACTTGGTGTTACGTCTGCGAGGTGG 5746414 Score = 127 bits (140), Expect = 1e-24 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||| | |||||||| || |||||||||||||| || || | Sbjct 5746872 ATGCAGATCTTCGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCC 5746931 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | || | | ||||| |||||| | || ||||| || Sbjct 5746932 GACACCATCGAGAATGTTAAAGCCAAGA-TCCAAGACAAGGAAGGTATCCCCCCAGACCA 5746990 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 || ||| | || || ||||||||||| |||| || | || |||| | | || ||| Sbjct 5746991 GCAACGTCTCATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACACTCTCG--GACTAC 5747048 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| ||||||||| | || || || Sbjct 5747049 AACATCCAAAAGGAGTCCACACTTCACTTGGT 5747080 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||| | || || ||||| ||||| | || ||||| || || Sbjct 5745276 ATGCAGATTTTTGTGAAGACCTTGACAGGCAAAACCATCACATTAGAGGTTGAACCCTCG 5745335 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| ||||| |||||| ||||| ||||| | || |||||||| Sbjct 5745336 GACACAATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 5745395 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 || ||| | || ||||| || || || || ||||| | || |||||| | || |||| Sbjct 5745396 CAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCG--GACTACA 5745453 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || ||||| || || ||| |||| || || | | ||| ||||||| Sbjct 5745454 ATATCCAAAAGGAATCGACACTACACTTGGTGCTTCGTTTGAGAGGAGG 5745502 Score = 118 bits (130), Expect = 7e-22 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 |||||| || ||||||||||| || || ||| | ||||| || || ||||| | || | Sbjct 5744583 AATTAC--AAGATGCAGATTTTTGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGG 5744640 Query 23660 TTGACTCCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 | || | ||||||| ||| |||| |||| | || ||| |||||||| || | Sbjct 5744641 TGGAGCCTTCGGACACAATTGAAAATGTTAAGGC-CAAGATTCAAGACAAAGAGGGCATC 5744699 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || ||||| || ||| | || || |||||||||||||| |||||||| | |||||| || Sbjct 5744700 CCCCCAGACCAGCAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACATTG 5744759 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || |||||||| || || || |||||| | || || || Sbjct 5744760 TCTGACTACAACATCCAGAAGGAATCCACACTTCACTTGGT 5744800 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || ||||| || ||||| ||||| || || || | Sbjct 5745731 AATGCAGATCTTTGTGAAGACCTTAACAGGAAAGACCATCACCCTCGAGGTGGAACCCTC 5745790 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| ||||| | || | | ||||| |||||| | || ||||| | Sbjct 5745791 TGACACCATCGAGAATGTTAAAGCCAAGA-TCCAAGACAAGGAAGGTATCCCCCCAGACC 5745849 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| | || || ||||||||||| || ||||| | || || | |||||||| Sbjct 5745850 AGCAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTACA 5745909 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || || || |||||| | || || || || | |||||||| || Sbjct 5745910 ACATTCAGAAGGAATCCACACTCCACTTGGTACTACGTTTGCGAGGTGG 5745958 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || ||||| ||||| | ||||| || || | Sbjct 5744820 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5744879 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| |||||| ||||| ||||| | || ||||| || Sbjct 5744880 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5744939 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||||||||| |||||||||| || || || || |||||| Sbjct 5744940 CAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGAACATTGTCTGACTACAAC 5744999 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || |||||| | || || || Sbjct 5745000 ATCCAGAAGGAATCCACACTTCACTTGGT 5745028 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || ||||| ||||| | ||||| || || | Sbjct 5745048 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5745107 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| |||||| ||||| ||||| | || ||||| || Sbjct 5745108 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5745167 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||||||||| || |||||||||| ||| || || || |||||| Sbjct 5745168 CAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGAACATTGTCTGACTACAAC 5745227 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || |||||| | || || || Sbjct 5745228 ATCCAGAAGGAATCCACACTTCACTTGGT 5745256 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || ||||| || || || || || | Sbjct 5746416 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTGGAACCCTCA 5746475 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | |||| || ||||| |||||| | || ||||| || Sbjct 5746476 GACACCATTGAGAATGTTAAAGCCAAAA-TTCAAGACAAGGAAGGTATCCCTCCAGACCA 5746534 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||||||||| || ||||| | || || | ||||||||| Sbjct 5746535 GCAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTACAA 5746594 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || |||||| | || || || || | ||||||| || Sbjct 5746595 CATTCAGAAGGAATCCACACTCCACTTGGTACTACGTCTGCGAGGTGG 5746642 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||| ||| | || || || || ||||| | || ||||| | | Sbjct 5745504 ATGCAAATTTTTGTTAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCTTCA 5745563 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| ||||| | || | | || || |||||| | || ||||| || Sbjct 5745564 GATACCATTGAGAATGTTAAAGCCAAGA-TCCAAGATAAGGAAGGTATCCCCCCAGACCA 5745622 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || |||||||| ||||| |||| || | ||| || | |||||||| Sbjct 5745623 GCAACGTCTCATCTTTGCCGGTAAACAGTTGGAGGATGGACGTACACTCTCTGATTACAA 5745682 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || |||||| | || || || || | ||||||| ||| Sbjct 5745683 CATTCAGAAGGAATCCACACTCCACTTGGTATTGCGTCTGCGAGGTGGA 5745731 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || ||||| || || | ||||| || | | Sbjct 5745960 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCT 5746019 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | | ||||| |||||| | || ||||| || Sbjct 5746020 GACACCATCGAGAATGTTAAGGCCAAGA-TCCAAGACAAGGAAGGTATCCCCCCAGACCA 5746078 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||||||||| || || || | ||| || | || ||||| Sbjct 5746079 GCAGAGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACACTCTCTGACTACAA 5746138 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 5746139 CATCCAAAAAGAGTCCAC 5746156 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| | || || || | || Sbjct 5747100 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 5747159 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | |||| | ||||| |||||| | || ||||| || Sbjct 5747160 GACACCATCGAGAATGTTAAAGCCAAAA-TCCAAGACAAGGAAGGTATCCCCCCAGACCA 5747218 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 || ||| | || || ||||||||||| |||| || | || |||| | | || ||| Sbjct 5747219 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACACTCTCG--GACTAC 5747276 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 5747277 AACATCCAGAAGGAGTCTAC 5747296 >seq5346 Length=541963 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || |||||| | ||||| || | | Sbjct 231237 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 231296 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | ||||| || || || |||||||| | || ||||| ||| Sbjct 231297 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 231356 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | |||||||| || |||||| |||||||| | | |||||| |||||| || Sbjct 231357 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 231416 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| ||| ||||||| |||||||| || ||||||| Sbjct 231417 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 231463 >seq2115 Length=629047 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || |||||| | ||||| || | | Sbjct 361007 ATGCAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCT 360948 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | ||||| || || || |||||||| | || ||||| ||| Sbjct 360947 GATACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAA 360888 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | |||||||| || |||||| |||||||| | | |||||| |||||| || Sbjct 360887 CAGAGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAAT 360828 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| ||| ||||||| |||||||| || ||||||| Sbjct 360827 ATTCAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGAGGAGG 360781 >seq2352 Length=6838751 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| || Sbjct 481934 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCC 481993 Query 23668 ACGGACACTGTTGAAA 23683 ||||||| | |||| Sbjct 481994 TCGGACACCATCGAAA 482009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986646190576