Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq3133 260 1e-64 seq5346 95.1 1e-14 seq2115 95.1 1e-14 seq1358 86.0 5e-12 >seq3133 Length=7630298 Score = 260 bits (288), Expect = 1e-64 Identities = 640/962 (67%), Gaps = 15/962 (2%) Strand=Plus/Plus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 |||||||| || ||||||||||| ||| | || || || || || || || | Sbjct 1021620 GCGTACTTCGTTGAATGGGGTGTCTACCCAAGAAAATTCCCTGTTGATCGTGTACCAATT 1021679 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || ||| | | ||| | ||||||||||||||||||| || || ||||| ||||||||| Sbjct 1021680 CCTAATCTGACTCATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGCATCAAC 1021739 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 ||| | || || |||||||| | ||| | |||||||| ||| |||| ||| Sbjct 1021740 GACAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGC 1021799 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || ||||||||||| || || ||||| ||||| || | || || || ||||| || Sbjct 1021800 GAAGATTTCAAAGTTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCACAAAAGGGT 1021859 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 | | | ||||| ||||| ||||||||||||||||| || ||||| | ||| Sbjct 1021860 CTTTCTTCCTGGAATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTTAAACAA 1021919 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTTT 109500 || | ||| || ||||||| ||||| ||||| || || ||||| | | || || || Sbjct 1021920 GCCAGGCCTGACCTTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCAGATCCCTTC 1021979 Query 109501 TATTTTATGCAC-GATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTTT 109559 | | || | ||| || | ||| |||| ||||| || || ||| || || | Sbjct 1021980 T-TCTTCTTCACAGACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGAAAGATTTCCT 1022038 Query 109560 ACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGGG 109619 || ||||| ||||| ||||| || || || |||||||| || || ||||| ||||| Sbjct 1022039 TCAGACATGGAAGTTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGGTAAGGG 1022098 Query 109620 TGCCAATCCGAGTCTCGGC-GACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTAA 109678 || ||||| || ||| | | ||| ||| | | ||| ||| || | | Sbjct 1022099 AGCTAATCCAGACCTTGGCAGTCCCAA----GGACGGAGATGTTTACGTTGAATTAATGA 1022154 Query 109679 AAGAGTTGCGCGCCATGTTGGACGAC--TTGCAAACGGCCACCAACAAAACGTACGAATT 109736 | || ||||| | |||||| ||||| || | || | ||| || | ||||| | Sbjct 1022155 AGGAATTGCGTGAAATGTTGAACGACCTTTCCGAA--GAGACCGGTAAGAAATACGAGCT 1022212 Query 109737 GACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGCGCA 109796 ||| || ||||| || || | ||||| ||| | || ||||||||| ||| || Sbjct 1022213 GACCTCTGCTATTAGTGCTGGATGGGATAAGATTCAAGTTGTCGATTACAGTGAGGCTCA 1022272 Query 109797 ACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAACAC 109856 | || ||||| | || || | |||| ||||| ||||||||||| ||||| ||| Sbjct 1022273 GAAGTACATGGACCACATCTTCCTTATGAGTTACGACTTCAAAGGCGCCTGGTCTAACGA 1022332 Query 109857 GGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACAC 109916 | | || |||| || | | ||||| ||| | ||||| || || ||| ||||| Sbjct 1022333 TACCCTCGGTCATCAGACTCCGCTTTACGCTCCCGCTTGGAACCCTAAGGAAACTTACAC 1022392 Query 109917 GACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTC--GCCTaaaaaaaTTATA 109974 || || | | || ||| | | | | | || ||||| ||||| || ||| | Sbjct 1022393 AACTGACTTTGGTGTGAAATA--TTTGCTTGCTCAAGGTGTCAACCCTAAGAAGATTGTG 1022450 Query 109975 ATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTCGTGCACGCCGACGACGCGAAT 110034 | || ||||| |||||||| ||||||||||| || ||| | ||| || ||| Sbjct 1022451 GTGGGTGTAGCTATGTACGGACGCGGCTGGACCGGTGTCCACAATTACGAAGATAATAAT 1022510 Query 110035 CCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTGGAC 110094 || || |||| ||| | || || || |||| |||||| || |||| || || || Sbjct 1022511 CCCTTCACAGGCAACGCGACAGGACCTGTCAAAGGTACTTGGCAAGACGGTGTAGTTGAT 1022570 Query 110095 TA 110096 || Sbjct 1022571 TA 1022572 >seq5346 Length=541963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/154 (74%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 100993 AATAC-AGTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTT 101051 ||||| |||| || | || || |||| |||||||| |||| || | || ||||| Sbjct 231483 AATACGAGTTCTTCTTCTTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTT 231424 Query 101052 TTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAA 101111 |||||||||| ||||||| | ||| | |||||||||||||| || ||| |||||| Sbjct 231423 TTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAA 231364 Query 101112 GCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 | || ||||||||| || | |||||||| || Sbjct 231363 GTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATC 231330 >seq2115 Length=629047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/154 (74%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 100993 AATAC-AGTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTT 101051 ||||| |||| || | || || |||| |||||||| |||| || | || ||||| Sbjct 360761 AATACGAGTTCTTCTTCTTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTT 360820 Query 101052 TTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAA 101111 |||||||||| ||||||| | ||| | |||||||||||||| || ||| |||||| Sbjct 360821 TTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAA 360880 Query 101112 GCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 | || ||||||||| || | |||||||| || Sbjct 360881 GTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATC 360914 >seq1358 Length=322254 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 100993 AATAC-AGTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTT 101051 ||||| |||| || | || || |||| |||||||| |||| || | || ||||| Sbjct 214 AATACGAGTTCTTCTTCTTACCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTT 155 Query 101052 TTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAA 101111 |||||||||| ||||| | | ||| | |||||||||||||| || ||| |||||| Sbjct 154 TTTGAATATTATAATCAGATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAA 95 Query 101112 GCCTTTGTTGGTCT 101125 | || ||||||||| Sbjct 94 GTCTCTGTTGGTCT 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409632980447148