Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1390 327 1e-84 seq1673 322 4e-83 seq4120 116 3e-21 >seq1390 Length=76047 Score = 327 bits (362), Expect = 1e-84 Identities = 623/910 (68%), Gaps = 12/910 (1%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| || | ||| || || || ||||| || ||||| || | | |||||||| Sbjct 55086 TTTTTGATACTGAGATTCTTTTTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATT 55027 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||| ||||| || ||||| | || ||||||| || || | || || | Sbjct 55026 TTCCATGAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCCCCAAGGTTTATCAA 54967 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 |||| ||| ||||||||||| ||||| | || ||| |||| ||| || |||||||| | Sbjct 54966 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 54907 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||||||| | | ||||| |||||||| || |||| || || | || Sbjct 54906 ATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACAAT 54847 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAA 4554 ||| || || ||||| |||||| | |||| || | | || ||||| |||| Sbjct 54846 ATCCTTGATCTTATCGCA------TTTATTGA-TAAGATAACTATTTAACAAACAAGCAA 54794 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 | || ||||||| |||||| |||| |||||| ||||| || ||||||| || || |||| Sbjct 54793 ATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGCA 54734 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | |||||| || || | ||| || || | ||||||| ||| |||||| || |||| Sbjct 54733 TGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTT 54674 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCAT 4733 | || ||||| || | | || || | || | || | ||||||||| |||||| Sbjct 54673 CGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTT-TTTGTCTTTTATCCAT 54615 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT 4793 || |||||||| | ||| || || |||| | || ||||||| |||||| |||| | Sbjct 54614 TTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGA 54555 Query 4794 TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 | | ||||||| || || |||||| || ||||| |||| ||||||||||||| Sbjct 54554 TGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAA 54495 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 || |||||||| ||| | | ||| ||||| ||||| ||| | || ||| | ||| Sbjct 54494 TGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGACT 54435 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || | |||| ||||| || | || ||||| ||||| ||| || || ||||| Sbjct 54434 TCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAAT 54375 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 || | || ||| || | |||||| ||| || || | | ||||| | ||| Sbjct 54374 GCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAGTTCCAATCATATAAA 54315 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 || | | ||||||||||||| | |||||||| || ||| |||| ||||||||| Sbjct 54314 TCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTACATC 54255 Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGG-TGTAAG 5152 ||| ||||| |||| | ||| || | | || ||||| | || ||||| | ||| Sbjct 54254 TTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCTTGTTTCTTTAGGATCTAA- 54196 Query 5153 AAGCGGTTCT 5162 ||| |||||| Sbjct 54195 AAGTGGTTCT 54186 >seq1673 Length=160240 Score = 322 bits (356), Expect = 4e-83 Identities = 622/910 (68%), Gaps = 12/910 (1%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| || | ||| || || |||||||| || ||||| || | | |||||||| Sbjct 44700 TTTTTGATACTGAGATTCTTTTTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATT 44759 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||||||||| || ||||| | || ||||||| || || || || | Sbjct 44760 TTCCATAAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCTCCAAGGTTTATCAA 44819 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 |||| ||| ||||||||||| ||||| | || ||| |||| ||| || |||||||| | Sbjct 44820 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 44879 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || |||| | | ||||| |||||||| || |||| || || | || Sbjct 44880 ATTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGAT 44939 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAA 4554 ||| || || ||||| |||||| | |||| || | | || ||||| |||| Sbjct 44940 ATCCTTGATCTTATCGCA------TTTATTGA-TAAGATAACTATTTAACAAACAAGCAA 44992 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 | || ||||||| |||||| |||| |||||| ||||| || ||||||| || || |||| Sbjct 44993 ACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGCA 45052 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | |||||| || || | ||| || || | ||||||| ||| |||||| || |||| Sbjct 45053 TGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTT 45112 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCAT 4733 | || ||||| || | | || || | || | || | ||| |||||||||||| Sbjct 45113 CAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTT-TTTATCTTTAATCCAT 45171 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT 4793 || || ||||| | ||| || || |||| | || ||||||| |||||| |||| | Sbjct 45172 TTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGA 45231 Query 4794 TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 | | ||||||| || || |||||| || ||||| |||| ||||||||||||| Sbjct 45232 TGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAA 45291 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 || |||||||| ||| | | ||| ||||| ||||| ||| | || ||| | ||| Sbjct 45292 TGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGACT 45351 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || | |||| ||||| || | || ||||| ||||| ||| || || ||||| Sbjct 45352 TCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAAT 45411 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 || | || ||| || | |||||| ||| || || | | ||||| | ||| Sbjct 45412 GCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAATTCCAATCATATAAA 45471 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 || | | ||||||||||||| | |||||||| || ||| |||| ||||||||| Sbjct 45472 TCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTACATC 45531 Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGG-TGTAAG 5152 ||| ||||| |||| | ||| || | | || ||||| | || ||||| | ||| Sbjct 45532 TTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCTTGTTTCTTTAGGATCTAA- 45590 Query 5153 AAGCGGTTCT 5162 ||| |||||| Sbjct 45591 AAGTGGTTCT 45600 >seq4120 Length=16292344 Score = 116 bits (128), Expect = 3e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||| ||||| || || || | | ||||| ||||| |||| ||| || |||||||| || Sbjct 7436410 AATGTAAGTATCAATCAGCAAGGAGTACATCTCAGAGTGTACATTCTCCATAGCAATTTG 7436469 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936 ||||| |||||| | || ||||| | ||||||||| | |||||| ||||||| Sbjct 7436470 GAATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCTACTAG 7436529 Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995 || || || |||||||| ||| || |||||||| ||||||||||| ||||||| Sbjct 7436530 ATTCTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAAAACATGTTTAATAAAGT 7436588 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 |||||||||||| || |||||||| || || ||||| || ||||||||||| ||| || Sbjct 7436739 TAAATCAACTTCCTCTACAGTCCAGAATGAAGCTTCAGCCTTTTTGTACATTTGCCAGAT 7436798 Query 5102 ATCAGGATACTGAATCGGAAGTATGACAAATC 5133 ||||||||| || || || | ||||| |||| Sbjct 7436799 ATCAGGATATTGGATGGGGAAGATGACGAATC 7436830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427020599595476