Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2310 132 1e-25 seq1114 98.7 2e-15 seq2352 93.3 1e-13 >seq2310 Length=6428792 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || || ||||||||||||| | || | |||||||||| Sbjct 5746622 CAAG-TGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTA 5746564 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| || | |||||||| | | ||| |||||||| ||||||| Sbjct 5746563 GCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAA 5746504 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| |||| | | ||||||| || || ||||| || || || |||| Sbjct 5746503 TTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACCTCAAGGGTGATGGTCTTGC 5746444 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||||| |||| |||||| Sbjct 5746443 CAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||||||||||||||| || | | || | ||||| |||| Sbjct 5746166 CAAG-TGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTCTA 5746108 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| | ||||||||||| | | ||| |||||||| ||||| | Sbjct 5746107 GCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGA 5746048 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || ||||| | ||||| ||||||| Sbjct 5746047 TCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTTGC 5745988 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || |||| |||||| Sbjct 5745987 CAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||||||||| || ||||||| | || | |||||||||| Sbjct 5746394 CAAG-TGGAGGGTGGACTCTTTTTGGATATTATAATCGGAGAGTGTACGACCATCTTCTA 5746336 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| || | |||||||| | | ||| |||||||| ||||| | Sbjct 5746335 GCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGA 5746276 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | | |||| || || ||||| ||||| || || || | Sbjct 5746275 TCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCTTTC 5746216 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| || |||| |||||| Sbjct 5746215 CCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||||||||||||||| || | | || | ||||| |||| Sbjct 5746850 CAAG-TGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTCTA 5746792 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| | ||||||||||| | | ||| |||||||| ||||| | Sbjct 5746791 GCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCTTGGA 5746732 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || ||||| | ||||| ||||||| Sbjct 5746731 TCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTTGC 5746672 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || |||| |||||| Sbjct 5746671 CAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| || | || |||| ||| ||||| | Sbjct 5745026 CAAG-TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCTTCCA 5744968 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||| ||||| | ||||||||||| | | ||| |||||||| ||||| | Sbjct 5744967 GCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGA 5744908 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| ||||||| | || | |||| || || ||||| | || || ||||||| Sbjct 5744907 TTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTTGC 5744848 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || |||| |||||| Sbjct 5744847 CAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| || ||||||||||| || | | || | ||||| || | Sbjct 5747306 CAAG-TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCCA 5747248 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| |||||||||||||| | |||||||| | | ||| |||||||| ||||| | Sbjct 5747247 ACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGA 5747188 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| |||| | | |||| ||| ||| || || | || || || |||| Sbjct 5747187 TTTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 5747128 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| |||||| Sbjct 5747127 CTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| |||||||||||||| || | | || | ||||| || | Sbjct 5747078 CAAG-TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCCA 5747020 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| || | |||||||| | | ||| |||||||| ||||| | Sbjct 5747019 ACTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGA 5746960 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | | |||| || || ||||| ||||| || || || | Sbjct 5746959 TCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCTTTC 5746900 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| |||||| Sbjct 5746899 CCGTTAAGGTCTTAACGAAGATCTGCAT 5746872 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| || | || |||| || ||||| | Sbjct 5745254 CAAG-TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCTTCCA 5745196 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| | ||||||||||| | | ||| |||||||| ||||| | Sbjct 5745195 GCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGA 5745136 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| ||||||| | || | |||| || || ||||| | || || ||||||| Sbjct 5745135 TTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTTGC 5745076 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || |||| |||||| Sbjct 5745075 CAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || || ||||||||||||| | || | |||||||||| Sbjct 5745938 CAAG-TGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTA 5745880 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| || | |||||||| | | ||| |||||||| ||||| | Sbjct 5745879 GCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGA 5745820 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | | |||| || || || || || || || || || | Sbjct 5745819 TCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGTCTTTC 5745760 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | |||||||| |||| ||||||| Sbjct 5745759 CTGTTAAGGTCTTCACAAAGATCTGCATT 5745731 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| || | || || | |||||||| | Sbjct 5744798 CAAG-TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGTCCATCTTCCA 5744740 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||| ||||| | ||||||||||| | | ||| || || || ||||||| Sbjct 5744739 GCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGAA 5744680 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | |||| ||| ||| || || | || || || |||| Sbjct 5744679 TCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 5744620 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| | |||||||| || | |||||| || Sbjct 5744619 CCGTCAAGGTCTTCACAAAAATCTGCATCTT 5744589 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || |||||||| ||||| || | | || | |||||||| | Sbjct 5745482 CAAG-TGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTCGA 5745424 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || |||||||| | ||||| || | | || |||||||| ||||||| Sbjct 5745423 GCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAA 5745364 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| | || | |||| || || || || | || || ||||||| Sbjct 5745363 TTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTTTTGC 5745304 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||||| || | |||||| Sbjct 5745303 CTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 >seq1114 Length=8361563 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| || || | |||||||| | Sbjct 2710501 CAAG-TGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCTTCCA 2710443 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | || ||||| || | | || || || || ||||||| Sbjct 2710442 ACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTCTTGAA 2710383 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| | || | |||| || || || || | || || ||||| | Sbjct 2710382 TTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGTTTTAC 2710323 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| || || || ||||||| ||||||| Sbjct 2710322 CCGTAAGGGTTTTTACGAAGATCTGCATT 2710294 >seq2352 Length=6838751 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 151979 CCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTAC 152038 |||||||||||||| | |||||| ||||| |||||||| || ||||||| | || | Sbjct 482062 CCTCTGCTGGTCCGGAGGGATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCGAT 482003 Query 152039 GCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGAC 152098 | |||| || || || || || || || ||||| |||||||| || |||||||| | Sbjct 482002 GGTGTCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAAT 481943 Query 152099 CTGCATTTT 152107 |||||| || Sbjct 481942 CTGCATCTT 481934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153738427290812