Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1673 257 2e-63 seq1390 244 1e-59 >seq1673 Length=160240 Score = 257 bits (284), Expect = 2e-63 Identities = 540/798 (68%), Gaps = 24/798 (3%) Strand=Plus/Plus Query 23242 TCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAA 23301 ||||| || ||||| ||||| | | ||| ||||||||||||||||| || ||||| | Sbjct 44725 TCGAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATAAAATCGAAAGGATTGGCT 44784 Query 23302 GTATTATATAC---AGCTT-TACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTC 23357 || || || | | ||| | || | | || || | || || ||||||||||| Sbjct 44785 GTGTTGTAAATCTTATCTTCTCCAAGGTTTATC----AATAATCTGTCGGCTACAAATTC 44840 Query 23358 AATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATA 23417 |||||| | ||||| | | | || || || || || || ||||| | ||| Sbjct 44841 AATATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACTGGTAAACTTTCACT 44900 Query 23418 TAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT----TTGAACAATAACTTCTT 23473 ||| ||| || ||| || || || || || || |||| | || | || Sbjct 44901 TAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGATATCCTTGATCT-TATCGCATT 44959 Query 23474 CACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTT 23533 | | |||| ||| || |||| ||||| ||||| || ||||| || |||| Sbjct 44960 TATT-----GATAAGATAACTATTTAAC----AAACAAGCAAACTCGCAATGCAGACCTT 45010 Query 23534 CATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAA 23593 |||| | ||||| | |||||| ||||| | || || ||||| | |||| ||| || | Sbjct 45011 CATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGCATGAGACCTCTTTTCTTTA 45070 Query 23594 TCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCA 23653 ||| || || | |||||||| ||| ||||||||| || |||||| ||||| || | Sbjct 45071 ACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCAACACAAGCAAATGCGA 45130 Query 23654 CAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCT 23713 || | ||| |||| || | || | ||| ||||||||| | ||||| ||||| Sbjct 45131 TAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCATTTCAAAGCCCAATCAGCCT 45190 Query 23714 TCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTAT 23773 || ||| | | | ||||| | || || || | ||| | ||||||| || || Sbjct 45191 TCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGATGATTTTTTTCGTCCGGAT 45250 Query 23774 CTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAA 23833 | | ||||| ||||| || |||||| ||||||||||||||| |||||||| ||| | | Sbjct 45251 CACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATATTTTCGATAACTA 45310 Query 23834 TCTGAAACCCATAAAAACATCTAGCTTCAGACAATTG-AACATCATTAAAAAATCTTTTA 23892 ||| || |||||||||||| | || || | ||| | || || | |||| |||| | Sbjct 45311 CCTGGAATCCATAAAAACATTTTGCCTC-TAAAATGGTGACTTCCTCGGAAAACCTTTCA 45369 Query 23893 GCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATA 23952 | | ||| || |||||||||||| |||||| || || ||||||| || | | | Sbjct 45370 ACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGAATATGTGAAACA 45429 Query 23953 AAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACT 24012 || | ||||||||| | || ||| |||||||||| | ||| ||| | ||||||| Sbjct 45430 AAGTATCTTTCATCTGGTGTTAAAGAATTCCAATCATATAAATCGGCTGAAAGATCAACT 45489 Query 24013 TCATCAACTGTCCAAAAA 24030 || ||| | ||||||||| Sbjct 45490 TCTTCAGCGGTCCAAAAA 45507 >seq1390 Length=76047 Score = 244 bits (270), Expect = 1e-59 Identities = 373/529 (71%), Gaps = 2/529 (0%) Strand=Plus/Minus Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 || ||||| ||||| || ||||| || |||||||| | ||||| | |||||| ||||| Sbjct 54806 AACAAACAAGCAAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAAC 54747 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA 23622 | || || ||||| | |||| ||| || | ||| || || | |||||||| ||| | Sbjct 54746 GACAAACCAGGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTA 54687 Query 23623 AAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAA 23682 |||||||| || || ||| ||||| || | || | ||| |||| || | || | Sbjct 54686 AAGAAAATTCCTTCGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTG 54627 Query 23683 TCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATT 23742 || |||||||| || ||||| ||||||| ||| | | | ||||| | || Sbjct 54626 TCTTTTATCCATTTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATA 54567 Query 23743 GCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 || || | ||| | ||||||| || ||| | ||||| ||||| || |||||| | Sbjct 54566 GCATTAAGAAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAA 54507 Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 |||||||||||||| |||||||| ||| | | ||| || |||||||||||| | || || Sbjct 54506 TACATTTCAGAATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTC- 54448 Query 23863 GACAATTG-AACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 | ||| | || || | |||| |||| | | | ||| || |||||||||||| Sbjct 54447 TAAAATGGTGACTTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGA 54388 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTT 23981 |||||| || || ||||||| || | | ||| | ||||||||| | || ||| || Sbjct 54387 AGCAGCGAAAAATGCAAGAATATGTGAAACAAAGTATCTTTCATCTGGTGTTAAAGAGTT 54328 Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 |||||||| | ||| ||| | ||||||||| ||| | ||||||||| Sbjct 54327 CCAATCATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAA 54279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521451678360800