Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2310 181 3e-40 seq1114 141 2e-28 seq2352 134 3e-26 seq5346 129 1e-24 seq2115 129 1e-24 seq1358 102 2e-16 >seq2310 Length=6428792 Score = 181 bits (200), Expect = 3e-40 Identities = 164/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||| || |||||||||||||||||| ||| ||| Sbjct 5745735 CAGATCTTTGTGAAGACCTTAACAGGAAAGACCATCACCCTCGAGGTGGAACCCTCTGAC 5745794 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 5745795 ACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAA 5745854 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||||| |||||||| | || || ||||||| ||| | Sbjct 5745855 CGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTACAACATT 5745914 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 5745915 CAGAAGGAATCCACACTCCA-CTTG 5745938 Score = 172 bits (190), Expect = 1e-37 Identities = 162/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || |||||||| ||||||||| ||||||| Sbjct 5746419 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTGGAACCCTCAGAC 5746478 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| || ||||| ||||| ||||| |||||||| ||||||||| Sbjct 5746479 ACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGTATCCCTCCAGACCAGCAA 5746538 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||||| |||||||| | || || ||||||| ||| | Sbjct 5746539 CGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTACAACATT 5746598 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 5746599 CAGAAGGAATCCACACTCCA-CTTG 5746622 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || ||||| || ||||| ||||| |||||| ||| ||| Sbjct 5746191 CAGATCTTTGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCCGAC 5746250 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 5746251 ACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAA 5746310 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||||| |||||||| | || || |||||||||| || Sbjct 5746311 CGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCTCCGATTATAATATC 5746370 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 5746371 CAAAAAGAGTCCACCCTCCA-CTTG 5746394 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| || ||||| ||||| |||||| ||| ||| Sbjct 5746875 CAGATCTTCGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCCGAC 5746934 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 5746935 ACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAA 5746994 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||| | || ||||| | || || | || || ||| || Sbjct 5746995 CGTCTCATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACACTCTCGGACTACAACATC 5747054 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || ||||| || |||| Sbjct 5747055 CAAAAGGAGTCCACACTTCA-CTTG 5747078 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | ||||| ||||| ||||| | ||||| ||| ||| ||| Sbjct 5745279 CAGATTTTTGTGAAGACCTTGACAGGCAAAACCATCACATTAGAGGTTGAACCCTCGGAC 5745338 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| ||||| ||||| || || || || |||||| Sbjct 5745339 ACAATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAGCAA 5745398 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || |||||||||||||| | || ||| | || || || || Sbjct 5745399 CGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCGGACTACAATATC 5745458 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| ||||| || |||| Sbjct 5745459 CAAAAGGAATCGACACTACA-CTTG 5745482 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | ||||| || || |||||| | |||||||| || ||| Sbjct 5747103 CAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGAC 5747162 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| || || || ||||| ||||| ||||| || ||||||||| Sbjct 5747163 ACCATCGAGAATGTTAAAGCCAAAATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAA 5747222 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| |||||| | || ||||| | || || | || || ||| || Sbjct 5747223 CGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACACTCTCGGACTACAACATC 5747282 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 5747283 CAGAAGGAGTCTACTCTGCA-CTTG 5747306 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || || || ||||| | ||||| ||| ||||| Sbjct 5745507 CAAATTTTTGTTAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCTTCAGAT 5745566 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||| || || || ||||| ||||| || ||||||||| Sbjct 5745567 ACCATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAGCAA 5745626 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| |||||| | || |||||| | || || | ||||| ||| | Sbjct 5745627 CGTCTCATCTTTGCCGGTAAACAGTTGGAGGATGGACGTACACTCTCTGATTACAACATT 5745686 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 5745687 CAGAAGGAATCCACACTCCA-CTTG 5745710 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || ||||| || ||| | || || ||| || ||| Sbjct 5745963 CAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCTGAC 5746022 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| ||||| ||||| || |||||||| Sbjct 5746023 ACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAG 5746082 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||||| || |||||| | || || | || || ||| || Sbjct 5746083 AGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACACTCTCTGACTACAACATC 5746142 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 5746143 CAAAAAGAGTCCACCCTCCA-CTTG 5746166 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || ||||| || ||| | || || ||| || ||| Sbjct 5746647 CAGATCTTTGTCAAGACCTTGACTGGCAAAACCATTACCTTAGAAGTCGAACCTTCTGAC 5746706 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || || || ||||| ||||| || |||||||| Sbjct 5746707 ACCATCGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGACCAGCAG 5746766 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||||| || |||||| | || || | || || ||| || Sbjct 5746767 AGATTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGTACACTCTCTGACTACAACATC 5746826 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 5746827 CAAAAAGAGTCCACCCTCCA-CTTG 5746850 >seq1114 Length=8361563 Score = 141 bits (156), Expect = 2e-28 Identities = 172/234 (74%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || ||||| || || | ||||| ||| ||| ||| Sbjct 2710298 CAGATCTTCGTAAAAACCCTTACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCTGAC 2710357 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||| |||||||| || || || || || |||||| Sbjct 2710358 ACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCAGCAA 2710417 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||| | ||||||||| | || | |||| || ||| || Sbjct 2710418 AGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCCGACTACAACATC 2710477 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGATAA---AATGTTACT 178154 || || ||||| ||||| || | || ||||| || || | ||||||||| Sbjct 2710478 CAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGAGGAGGTAATGTTACT 2710531 >seq2352 Length=6838751 Score = 134 bits (148), Expect = 3e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || ||||| |||||||||||||| ||| ||| ||| Sbjct 481940 CAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCCTCGGAC 481999 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| || |||||| |||||||| || || || |||||||||||||||||||| Sbjct 482000 ACCATCGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATCCCTCCGGACCAGCA 482058 >seq5346 Length=541963 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | |||||||| || ||||| | || || ||| || || Sbjct 231240 CAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCTGAT 231299 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||||| || || ||||||||||||||||| ||||| || Sbjct 231300 ACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAACAG 231359 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || || ||||| | ||||| |||||| | |||||||||| | Sbjct 231360 AGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAATATT 231419 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||| ||||| ||| | ||||| ||| | ||| Sbjct 231420 CAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGA 231458 >seq2115 Length=629047 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | |||||||| || ||||| | || || ||| || || Sbjct 361004 CAGATTTTTGTAAAGACATTAACAGGAAAGACAATCACTTTGGAAGTAGAACCTTCTGAT 360945 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||||| || || ||||||||||||||||| ||||| || Sbjct 360944 ACTATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAACAG 360885 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || || ||||| | ||||| |||||| | |||||||||| | Sbjct 360884 AGACTTATATTTGCTGGTAAACAATTGGAAGACAATAGGACTTTATCCGATTATAATATT 360825 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||| ||||| ||| | ||||| ||| | ||| Sbjct 360824 CAAAAAGAAAGTACACTACATTTGGTTTTAAGATTAAGA 360786 >seq1358 Length=322254 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || ||||| | || || ||| || || || || ||||| || ||| ||||| || Sbjct 1 ACAATCACTTTGGAAGTAGAACCTTCTGATACTATTGAGAATGTAAAAGCCAAGATCCAA 60 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 || || |||||||||||||| ||||| || ||||||| || || || ||||| | ||| Sbjct 61 GATAAGGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAA 120 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || |||||| | | |||||||| | ||||||||| ||||| ||| | ||||| Sbjct 121 GACAATAGGACTTTATCTGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTA 180 Query 178134 AGACTCAGA 178142 ||| | ||| Sbjct 181 AGATTAAGA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203645264124968