Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2310 125 7e-24 seq1114 104 2e-17 seq2352 86.0 6e-12 >seq2310 Length=6428792 Score = 125 bits (138), Expect = 7e-24 Identities = 173/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 41626 TACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 |||| ||| ||||||||| ||||| | ||||| ||||| || ||||||||| ||||| Sbjct 5747335 TACAACAC-GCCGCCGCGAAGACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTT 5747277 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 ||||| ||||| || || | || || | ||| ||||||||||| || || || || || Sbjct 5747276 GTAGTCCGAGAGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTG 5747217 Query 41746 GTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGC 41804 ||| | ||| | | ||||||| | || |||| |||| ||| | | ||||| Sbjct 5747216 GTCTGGGGGGATACCTTCCTTGT-CTTGGATTTTGGCTTTAACATTCTCGATGGTGTCCG 5747158 Query 41805 TCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||||||| || || || || || |||| ||||| ||||| |||||||| Sbjct 5747157 AAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| |||||||| ||||| ||||| || Sbjct 5744818 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5744759 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || ||||| |||||||| || |||| | ||| ||||| | ||| Sbjct 5744758 AATGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5744699 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | || ||| ||||| ||| | || || | ||| || ||||| | |||||| Sbjct 5744698 ATGCCCTCTTTGTCT-TGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCAC 5744640 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || ||||||| ||||| || ||||||||||| || Sbjct 5744639 CTCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCATCTT 5744589 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| |||| || || ||| |||||||||||||| || |||||| Sbjct 5746642 CCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5746583 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| ||||||||||| || || || || ||||| | || Sbjct 5746582 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5746523 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| |||| |||| ||| | | ||||| | ||||| Sbjct 5746522 ATACCTTCCTTGT-CTTGAATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCAC 5746464 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| || || |||||||| Sbjct 5746463 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||||||||| || || ||| ||| || || || ||||| |||||| Sbjct 5746414 CCACCTCGCAGACGTAACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAG 5746355 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| ||||||||||| || || || || ||||| | ||| Sbjct 5746354 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5746295 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || | || |||| ||| | | |||||| | ||||| Sbjct 5746294 ATACCTTCCTTGT-CTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCAC 5746236 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || ||||| | ||||| || || |||||||| Sbjct 5746235 TTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| |||||||| ||||| ||||| || Sbjct 5745274 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5745215 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || |||||||||||||| || |||| | ||| ||||| | ||| Sbjct 5745214 AATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5745155 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | || ||||||||| || | | ||||| | ||||| Sbjct 5745154 ATGCCTTCCTTGT-CTTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCAC 5745096 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| ||||| || || |||||||| Sbjct 5745095 TTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||||| |||| || || ||| |||||||||||||| || |||||| Sbjct 5745958 CCACCTCGCAAACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5745899 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| ||||||||||| || || || || ||||| | ||| Sbjct 5745898 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5745839 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || | || |||| ||| | | ||||| | ||||| Sbjct 5745838 ATACCTTCCTTGT-CTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCAC 5745780 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || | ||||| || || |||||||| Sbjct 5745779 CTCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| |||||| || ||||| ||||| ||| Sbjct 5747098 CCACCACGGAGGCGAAGTACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCCGAG 5747039 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | ||| ||||||||||| || || || || ||||| | ||| Sbjct 5747038 AGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5746979 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || | || |||| ||| | | |||||| | ||||| Sbjct 5746978 ATACCTTCCTTGT-CTTGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCAC 5746920 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || ||||| | ||||| ||||| |||||||| Sbjct 5746919 TTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAACGAAGATCTGCAT 5746872 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| || || || ||||| || || ||||| | || ||||||||||| || || || Sbjct 5745466 TCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAG 5745407 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || || || || || | ||||| || ||||||| | ||| |||| |||| || Sbjct 5745406 ATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGT-CTTGAATTTTGGCTTTTACATT 5745348 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | || ||||| | || || ||||| || |||| ||||| || Sbjct 5745347 TTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTTTTGCCTGTCAAGGTCTTCAC 5745288 Query 41851 GAAAATCTGCAT 41862 ||||||||||| Sbjct 5745287 AAAAATCTGCAT 5745276 >seq1114 Length=8361563 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| || || || |||||||| ||||| |||||||| | || || | || Sbjct 2710506 AACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCT 2710447 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | ||| ||||||||||| |||| | || || || | |||| || ||| |||| | Sbjct 2710446 TCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGT-C 2710388 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| |||| || | | |||||| | || ||||| | |||||| || Sbjct 2710387 TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGT 2710328 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCA-TGTTA 41866 ||||||||| || || |||||||| ||||||| ||||| Sbjct 2710327 TTTACCCGTAAGGGTTTTTACGAAGATCTGCATTGTTA 2710290 >seq2352 Length=6838751 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || |||| ||| ||||| || || ||||||||| ||||| ||||||| Sbjct 482366 CGCCACCACGGAGCCGTAGCACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGG 482307 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCA 41735 |||| ||||| | || || | ||||||||| ||||| |||| Sbjct 482306 AGAGTGTGCGACCATCCTCCAACTGCTTGCCCGCGAAGATCA 482265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462271800526400