Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq39349 109 6e-19 seq27620 105 7e-18 seq47220 82.4 8e-11 >seq39349 Length=17693 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || ||||||| ||||||||||| ||||| |||| || || || | ||| ||| Sbjct 11339 ATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGTTATTTGA 11280 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || || || || ||| || || | ||||| || || | |||| ||||| ||| | Sbjct 11279 AACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTCGACCAAG 11220 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 || ||||| || ||||||||| || |||||||| || || | || |||||| | | Sbjct 11219 TTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAATGAATTTT 11160 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 |||| || | | | || | | ||||||| | ||||| Sbjct 11159 CTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 >seq27620 Length=20860 Score = 105 bits (116), Expect = 7e-18 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTT 16281 |||||||||| ||||| ||||| || ||||| | || |||||| |||| || Sbjct 18280 CTTCGTCTCT--TGATATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTT 18223 Query 16282 CTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAA 16341 || | |||||||||||||||||| || |||||||| ||||| || || | ||||| Sbjct 18222 TTTAAGCCAGAATATCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAA 18163 Query 16342 AGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTC 16401 || || | ||||| || | ||||| || || | ||||||||| |||| || Sbjct 18162 CGCAATGACCCGTTCAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTC 18103 Query 16402 GGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 ||||| | |||| |||| ||| ||||| ||||| || |||| Sbjct 18102 CGCTTTCTTCTTTACACAAGGCATTGTTTCAATGGCATTGAACA 18059 >seq47220 Length=26836 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTTATCGTTTAAGTAGATACA 119072 || || || || ||||| ||| | || || | ||| ||| || ||||||| || || | Sbjct 2374 CCAACATAACCATTGGGGTCTCTACCATCCATACT-GTATTTGTCGTTTAGATAAATCGA 2432 Query 119073 GACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACAT 119132 | ||| || ||| ||| |||| ||||||||| ||||||||| ||||| ||||| Sbjct 2433 AATTTCTAAAGCTTCTTCTGGACTCTTGGTCCATTCCAATATTTTTTTGGCCCAATACAT 2492 Query 119133 ACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAG 119192 | ||| ||||||||||||| || || || ||| || || || | |||||| | Sbjct 2493 TCTCAAAAACCCGTGCATTTTGCCTTCCACAACCATTTGTTTCTGAGCTGCGTTCCACAA 2552 Query 119193 AGGATCGTGTGT 119204 | |||||| || Sbjct 2553 ATCATCGTGAGT 2564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511030187146640