Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq39349 156 5e-33 seq4462 136 5e-27 seq27620 134 2e-26 seq3858 116 4e-21 >seq39349 Length=17693 Score = 156 bits (172), Expect = 5e-33 Identities = 169/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 ||||||||| ||||||||||| || || || || ||||||||||| | |||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||| | |||||| ||||||||||||||| ||||| || || ||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 24279 ATAAGTCTTTCTCCATAACCGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGGCC 24335 || | ||| |||||| || ||| ||| || |||||| || ||||| || || Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 24336 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 || |||| ||||||||||| || || || |||||||| ||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 145 bits (160), Expect = 9e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | ||| || |||||||| | ||| ||||| || ||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 |||||||| ||||| ||| |||| || |||| || || || ||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 | || |||||||| || || |||||| |||||||||||| || || |||||| || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 24619 || | | |||| || ||| | ||||| | |||||| ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 >seq4462 Length=45351 Score = 136 bits (150), Expect = 5e-27 Identities = 210/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 |||||| |||||||| | |||||||| || ||| | | ||| || | || ||| | Sbjct 16594 CAATCCGGGACATTCGTTGGGACACATTAAACTCCATTTTTCGTTATTTTCAACGCGTCT 16653 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 |||||| |||||| ||||| || || |||| ||| || | | | ||| || || Sbjct 16654 CATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTT 16713 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || | || ||| ||| || | ||| | | |||||| |||||||| ||||||||||| Sbjct 16714 ACCAGAGTTTTTTCGAAGCTCTAAGAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTA 16773 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 | | | | | || || | |||||| ||||| ||||| | ||||| || |||||||| Sbjct 16774 AACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATT 16833 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 ||| || | | ||| || | | |||||| ||| |||| || ||||| | || ||||| Sbjct 16834 ATATACCCGAAGCATCGGCACGAGACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||||||||||||||||| || || || | ||| | ||||| || || ||||| | Sbjct 15066 TCCATCCGTAAAAATGCATCGATGAAAGATTCGCGTAAGTTGGATCAGCCATGTGGATGT 15125 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | | |||| ||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 15126 TTAAACTTTGAGATTGGTCGATAAACGCTCCTCTGTCTGCAGCCATTTTTAGAATCGTCT 15185 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 | ||| |||||||| | ||||| |||| Sbjct 15186 TCTGTTTTATTTCCCATACGGTTTTGTAAA 15215 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 53366 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 53425 || |||||| | ||||||| || || || || || || || || ||| |||||| Sbjct 15771 CCTTTACTGACTGGCGATCCTTTGTAAGTTTCATAAGGACCGAACTGCTGAGCAAGTTCA 15830 Query 53426 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 53485 ||||| ||||| || |||||||||||||||||||| || |||| ||||||| ||| Sbjct 15831 CAACTTGCCTCCAAAGCACCGTAATAAATGGTTTCAAAAATCTGTATATTTAGTAATTGG 15890 Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 53545 | || | || || ||||| | | | ||||| ||| ||||||||||||| | Sbjct 15891 GATTGCTCACTCTCGAATGGCAGCCTCATCATGATAAATAAGTCGGCTAATCCTTGAATA 15950 Query 53546 CCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 || || || || || ||||| ||| ||| || Sbjct 15951 CCTATTCCAATCGGCCTATGCCTCAGATTCGA 15982 >seq27620 Length=20860 Score = 134 bits (148), Expect = 2e-26 Identities = 147/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || ||||| ||||||||||| | |||||||||||| ||||| | ||||| ||| Sbjct 18251 AAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATATCGCAGCAAAGCTTCCG 18192 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304 ||||||||||| ||||| || || ||||| ||||| | | ||| || || ||||| Sbjct 18191 GAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTTCAGCAAAAGTAGCGCTT 18132 Query 24305 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 ||| |||||| || ||||| || || ||||| ||||||||||||||||| || Sbjct 18131 TGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTACACAAGGCATTGTTTCA 18072 Query 24363 ATAGCATTAAAGAGA 24377 || ||||| || ||| Sbjct 18071 ATGGCATTGAACAGA 18057 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 ||| ||||| || || || ||||| | || ||||| || ||||| | ||||| |||| Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 |||||||||||||| || |||| || || | ||| || |||||| | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 ||||||||||||| || || || ||| || |||||||| || || || ||| || Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 24619 || | |||||| || ||| | ||||| | |||||| ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 ||||||||| || ||||| || ||||| || ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | || || | ||| | || | |||||||||||| || || ||||| ||||| Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 24083 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142 | | | ||| |||||||| | | ||||||||||||||||||||||| || Sbjct 18428 TTCGGTAATTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGCAAA 18369 Query 24143 ATCGCAGTGTAGACCCT 24159 |||| |||| ||||| Sbjct 18368 ATCGGTATGTAAACCCT 18352 >seq3858 Length=10210 Score = 116 bits (128), Expect = 4e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 54437 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATA 54496 || || ||||| || ||||| ||||| || |||| || | | || ||||| ||||| Sbjct 6204 AACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTATACGTATCGATC 6145 Query 54497 GCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555 |||| ||| |||||| || | |||||||| || ||||| ||||| ||||||||||| || Sbjct 6144 GCTGCGTCGATATCCTCACCG-TGAATTCCCACAGCGACTCGCATCAACATGTGCTGTGG 6086 Query 54556 TCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 |||||| || | ||| ||| ||||||| || || || ||||| ||||| Sbjct 6085 TCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGACTTTTCTAAAGT 6035 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 || || | |||||| |||||||| |||| ||| || || || || | ||| |||| | Sbjct 5729 CTGAACATTTTTTTGGTTTCTTTATGTAAATTGGAAACAGCAATACGAGCAGCTAACACA 5670 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAAT 54889 || |||||||||||| | ||||| || || || ||||||| | ||| | |||||| Sbjct 5669 GCGTAATCCGGATGTCGAGTAGTCATAGAAGCAGCGGTTTCGGCGGCTAGATTATCCAAT 5610 Query 54890 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 || | ||||||||| ||| | ||| ||| ||| || ||||| || |||| Sbjct 5609 TCCATCGTTGTTACACCAGGAAATAAACCTCTGATTACTTTCATTGCGATTT 5558 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| |||||||||||||| || |||| | || || || || ||||| ||||| | Sbjct 7923 TACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAA 7864 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || || |||||||| |||||||||||||| || || || |||||||| || | | ||| Sbjct 7863 GGATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAA 7804 Query 53269 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 53322 ||| || | ||||||| | | ||||| ||||| | | |||||| ||| Sbjct 7803 CGAATTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCA 7750 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 |||||||| || | | ||||| | || || || || | |||||||| || || || Sbjct 7116 TACCTCATCAGGAGCACTATATTCGACGATTTCGGTACACAAATTACTACTTTTAATAGT 7057 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 |||||||||||| ||||| ||| | || || ||||| ||||| | ||| | || || Sbjct 7056 TCCTAAATTTTGATGATTGGATTTTCTATTGCATGCATCTTTATATAACATGTAAGGTGT 6997 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGC 53880 ||||||||||| || || || | ||| || Sbjct 6996 CCCAGTTTCAATTTGCGAGTCCAAAATTGC 6967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593275551804960