Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq48073 111 1e-19 seq37708 105 6e-18 >seq48073 Length=7537 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || | ||||||||||| ||| | || || || || ||||||||||| || Sbjct 5829 TTCCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGC 5770 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| || |||| |||| || || || || | || | ||| || ||||| | Sbjct 5769 TCAAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTG 5710 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| ||||| ||| || | ||| ||||| ||||| Sbjct 5709 GGATGCCTTCCTTGTCCTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTA 5650 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| |||||||| || ||||||||||| ||||| || |||||||| Sbjct 5649 CTTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| ||||||||||| || || || ||| || |||| |||| |||||| || Sbjct 6481 GTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCTTCCAACTGTTTTCCG 6422 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | | ||||||||| || | |||||| || || || || ||| Sbjct 6421 GCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCCTGAATTTTAGCTTTG 6362 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | |||||| || || ||||| ||||||||| || |||||||||||| Sbjct 6361 ACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTTTACCGGTTAACGTT 6302 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 6301 TTAACAAAAATTTGCAT 6285 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || | ||||||||||| ||| | || || || || ||||||||||| || Sbjct 6741 TTCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGC 6682 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| || |||| |||| ||||| || || | || | ||| |||||||| | Sbjct 6681 TCAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTG 6622 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| || || |||||| | | | ||||| || || Sbjct 6621 GGATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAA 6562 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| |||||||| || || || || ||||| ||||| ||||||||| Sbjct 6561 CCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | || || || |||||||| ||||| || || || || |||| ||| Sbjct 6265 ACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCTTCC 6206 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | |||||| || || | || | |||||||||||| || | ||||| || || Sbjct 6205 AACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGT 6146 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| ||| || | ||| || || || ||| ||||| ||| ||||| || Sbjct 6145 ATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTTTTT 6086 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| | |||||| ||||| |||||||| Sbjct 6085 CCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | || ||||| ||||||||||| || || ||| || | |||| ||| Sbjct 6949 ACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTCTTCC 6890 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | |||||| || ||| | || | || ||||||||| || | ||||| || || Sbjct 6889 AACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATCCTGA 6830 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || || ||||| | ||| |||||| || || |||| ||||| ||||| Sbjct 6829 ATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGTCTTT 6770 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || ||||| || || ||||||||| Sbjct 6769 CCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 >seq37708 Length=8338 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||||| ||||| ||||||||||||||||| || | ||||| || | || Sbjct 3517 GAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATC 3576 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || || |||||||| || ||||||| | |||||||| || | || || || || Sbjct 3577 TTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATC 3636 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 || || || || | ||| || |||| |||||| ||| | || ||||| Sbjct 3637 TTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGT 3696 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| || ||||| || || |||||||| Sbjct 3697 CTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||||| || || || ||||| || ||||| || | | Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGAC 4702 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | || || ||||||||||| ||| | || | | || ||||| || Sbjct 4703 AAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGG 4762 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| ||| || ||||| | ||| ||| || | ||||| | Sbjct 4763 ATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACT 4822 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| || |||||||| || ||||| || || |||||||| Sbjct 4823 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||| |||| || | || || || ||||| ||||||||||||| Sbjct 4871 CCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAA 4930 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| |||| || || ||||| || || | || || | ||||| || || Sbjct 4931 AGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGG 4990 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || ||| || ||| || | ||| ||| || | ||||| | Sbjct 4991 ATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACT 5050 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||| || || || |||||||| ||||| || |||||||| Sbjct 5051 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||||| || |||||||||||||| ||||| |||| || ||| | || || Sbjct 3293 ACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGTTCTACCATCTTCG 3352 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 ||||| || || || |||| || | ||||| ||| || | ||||| ||||| | Sbjct 3353 AGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACCTTCTTTGTCTTGG 3412 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || || || || | ||| ||||| | ||||| ||| | ||| ||||| || Sbjct 3413 ATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGGGTGATGGTTTTA 3472 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || ||||| ||||| || || ||||| Sbjct 3473 CCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421949898039032