Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq48073 96.9 3e-15 seq37708 89.7 4e-13 >seq48073 Length=7537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| ||||| || ||||||||||| || ||||| | Sbjct 6512 AATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTC 6571 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || |||||| || ||||||||| | || || || Sbjct 6572 CGATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATCCCACCCGACCA 6631 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| | ||||| || || |||||||||||||| | |||| || |||||| || Sbjct 6632 GCAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATAA 6691 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || |||||||| || || ||||| | | ||||| || || Sbjct 6692 CATTCAGAAAGAATCTACGCTACATTTGGTGCTCAGGTTACGTGGTGG 6739 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| || || || |||||||||||| ||| ||||| | Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | |||| |||||| ||||||||||| | || || || Sbjct 6345 GATACGATTGAAAACGTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACCAG 6404 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | || || || || ||||| |||||||| | |||| || ||||||||| Sbjct 6405 CAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAAC 6464 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| || || || |||||| | || || || | ||||| || Sbjct 6465 ATTCAAAAAGAGTCAACCCTTCACTTAGTCTTGCGTCTCCGAGGTGG 6511 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| ||||| || || || ||||| || ||||| | Sbjct 6740 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTC 6799 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||| |||||| ||||||||||| | || || || Sbjct 6800 CGATACTATCGAAAACGTGAAGGCCAAAATTCAGGATAAAGAAGGAATCCCGCCTGACCA 6859 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || | |||||||| || ||||| |||||||| ||| || ||||||||| Sbjct 6860 GCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACAA 6919 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 25264 |||||||| || || || ||||| |||| ||||| | || ||||| || Sbjct 6920 CATTCAAAAAGAGTCGACCCTTCATTTGGTTTTACGTCTTCGTGGAGGTTA 6970 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | || || |||||||| ||| ||| |||||| | Sbjct 6057 ATGCAAATTTTTGTTAAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCC 6116 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | |||| || || |||||||||||| | || || || Sbjct 6117 GACACCATCGAAAACGTCAAAGCCAAGATACAAGATAAAGAAGGTATCCCACCCGACCAG 6176 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | ||||| || || ||||| |||||||| | ||| | |||||| ||| Sbjct 6177 CAGAGATTGATCTTCGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTATAAT 6236 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| |||||||| || || |||| ||||| Sbjct 6237 ATTCAAAAAGAATCTACCCTCCATTTGGTTTTACG 6271 >seq37708 Length=8338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| ||||| ||||| ||||| || ||| || ||| Sbjct 3729 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACCATCACGTTAGAAGTAGAGCCCAGT 3670 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| |||||| |||||||| || | || || || Sbjct 3669 GACACCATCGAAAACGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 3610 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| || || ||||||||| | |||||| | || | ||||||| || Sbjct 3609 CAACGTCTTATTTTCGCCGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGATTATAAC 3550 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| || || || |||| | |||||| |||| || Sbjct 3549 ATTCAAAAGGAATCCACCCTGCATTTGGTTCTCCGATTAAGAGGTGG 3503 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| ||||| |||||||| |||||| |||| || || Sbjct 4413 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTTGAGCCTAGC 4354 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| |||||||| || | || || || Sbjct 4353 GACACCATCGAAAATGTAAAGGCTAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 4294 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || || || || || |||||||||||||| | ||| | |||||||||| Sbjct 4293 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGACGGTAGAACGCTCTCCGATTACAAC 4234 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| || || ||| | || ||||| | ||||| | ||||| Sbjct 4233 ATCCAAAAAGAGTCGACTTTACATTTGGTGCTTCGATTGAGGGGAGG 4187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410495894168228