Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq37708 131 2e-25 seq48073 116 4e-21 seq39349 109 6e-19 seq27620 98.7 1e-15 >seq37708 Length=8338 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || || ||||||||||| |||| ||||| | | | Sbjct 4185 ATGCAAATTTTCGTAAAAACCTTGACAGGAAAAACCATCACACTCGAAGTCGAGCCAAGC 4126 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| ||||||| || |||||||| || ||| | |||||| Sbjct 4125 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCCGACCAG 4066 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| || ||||| || || |||| | || ||| ||||| || Sbjct 4065 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGTAGGACTCTCTCGGACTATAAT 4006 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || | ||| ||||| | || ||||| ||||| ||||| Sbjct 4005 ATTCAAAAAGAATCGACGTTGCATTTGGTTTTGCGATTGAGAGGCGG 3959 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || |||||||| || ||| |||| || || | | | Sbjct 4413 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTTGAGCCTAGC 4354 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| ||||||| || |||||||| || || | |||||| Sbjct 4353 GACACCATCGAAAATGTAAAGGCTAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 4294 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || ||||| |||| |||| | || ||| ||| |||||| Sbjct 4293 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGACGGTAGAACGCTCTCCGATTACAAC 4234 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || ||| | || | ||| | ||| | || |||||||| || Sbjct 4233 ATCCAAAAAGAGTCGACTTTACATTTGGTGCTTCGATTGAGGGGAGG 4187 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || ||||| |||||||| | || || || ||| Sbjct 3729 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACCATCACGTTAGAAGTAGAGCCCAGT 3670 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||||| || |||||||| || || | ||||| Sbjct 3669 GACACCATCGAAAACG-TCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCA 3611 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| |||||||| || || || | || ||||| ||| || || Sbjct 3610 GCAACGTCTTATTTTCGCCGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGATTATAA 3551 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| |||| |||||| | || | || || || || || Sbjct 3550 CATTCAAAAGGAATCCACCCTGCATTTGGTTCTCCGATTAAGAGGTGG 3503 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| ||| | || || ||||| ||||| |||| ||||| | | | Sbjct 3957 ATGCAGATTTTCGTAAAGACGTTAACCGGTAAAACAATCACACTCGAAGTCGAGCCTAGC 3898 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | || | ||||| | |||||||| || ||||| | || || Sbjct 3897 GATACGATCGAAAACG-TGAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCCGATCA 3839 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| || ||||| || || || | | || ||| |||||||| Sbjct 3838 ACAACGTCTCATCTTCGCCGGTAAACAACTCGAAGATGGAAGAACTCTCTCGGACTACAA 3779 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| |||||| |||| | || ||||| || || Sbjct 3778 CATCCAGAAAGAATCCACTCTGCATTTAGTTCTTCGATTGAGAGGTGG 3731 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || || || |||||| | || || |||||||||||| |||| || || Sbjct 5102 GAAAAATGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAGAGC 5043 Query 40745 CCACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | | ||||| | | ||||| |||| | ||||| | || ||||| |||||||| | Sbjct 5042 CGAGCGACACTATCGAAAACG-TCAAAGCGAAAATCCAAGATAAAGAAGGCATCCCTCCC 4984 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || |||||||| ||||||| ||| || ||||| || || |||| | ||||| ||| Sbjct 4983 GATCAGCAACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTTTCGGAC 4924 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| || || | || || || | || | || |||| ||||| Sbjct 4923 TATAACATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGACTGAGAGGCGG 4871 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || |||||||| || ||| |||| ||||| | | | Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | |||||||| |||||||| | ||||| Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || ||||||||||| || || | | ||| | ||| || || Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || | ||| ||||| | || | || ||||| || || Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTACTCCGTTTGAGAGGTGG 4643 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || |||||||||||| |||| ||||| | | | Sbjct 3501 ATGCAGATCTTCGTCAAGACGTTGACAGGTAAAACCATCACCCTCGAAGTCGAGCCTAGC 3442 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | |||| ||||| | |||||||| || ||||| |||| || Sbjct 3441 GATACGATCGAAAACG-TTAAGGCGAAAATCCAAGACAAAGAAGGTATCCCTCCGGATCA 3383 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| || || ||||| || || | | || || || || || Sbjct 3382 GCAACGTCTAATTTTCGCCGGAAAGCAGCTCGAAGATGGTAGAACGCTTTCGGATTATAA 3323 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| | ||| |||| | || ||||| Sbjct 3322 TATTCAAAAGGAGTCTACGTTGCACTTGGTATTGCG 3287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || | || || || || ||||| | || ||||| | | Sbjct 4641 ATGCAGATATTCGTCAAGACCTTGACTGGTAAGACTATCACATTGGAAGTCGAGCCTAGT 4582 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | |||||| ||||||| || || || ||||| || | || || Sbjct 4581 GACACGATTGAAAATG-TCAAGGCGAAAATTCAAGATAAGGAAGGCATTCCGCCCGATCA 4523 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || |||||||| || || | | ||||| || ||||| Sbjct 4522 GCAACGTCTCATCTTCGCCGGTAAACAGCTCGAAGATGGTAGAACCCTTTCGGATTACAA 4463 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || || | || || || | || | || || || ||||| Sbjct 4462 CATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGATTAAGAGGCGG 4415 >seq48073 Length=7537 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||||||||| || |||||||||||| | || || ||| | || Sbjct 6057 ATGCAAATTTTTGTTAAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCC 6116 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||| | || || | || ||||| || ||||| | ||||| Sbjct 6117 GACACCATCGAAAACG-TCAAAGCCAAGATACAAGATAAAGAAGGTATCCCACCCGACCA 6175 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || |||||| |||| |||| || || |||| ||| || || Sbjct 6176 GCAGAGATTGATCTTCGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTATAA 6235 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || | || || ||| | || || || Sbjct 6236 TATTCAAAAAGAATCTACCCTCCATTTGGTTTTACG 6271 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | || || || || || || | || || ||| | | Sbjct 5828 AATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATTACGCTGGAGGTAGAACCATC 5887 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | ||||| | || | ||||||| || ||||| || ||||| | |||| Sbjct 5888 AGATACCATCGAAAACG-TGAAAGCGAAAATTCAAGATAAAGAAGGTATCCCACCCGACC 5946 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||||||| | || | ||| |||||||| | || |||| || ||| | | |||||||| Sbjct 5947 AGCAACGATTAATTTTCGCTGGCAAACAATTAGAAGACGGACGTACCTTGAGCGACTACA 6006 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | |||||||| || |||| || ||| |||| || || Sbjct 6007 ATATCCAGAAAGAATCCACTCTTCATTTAGTTTTACG 6043 >seq39349 Length=17693 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || || || || || ||||| || |||||| || || || |||||| | | ||| Sbjct 11443 TTTAATGCAATTGAAACCATGCCTTGTGTCAAAAGAAAAGCAGACTGGGCGTTAAGATGG 11502 Query 117008 ATCGCCGG-CAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || || | |||| | || | || || ||| | | | || || || || ||||| || Sbjct 11503 ATAGCGGATCAGA-ACGCGACTTTTGGAGAGAGAATCATTGCGTTTGCTGCTGTCGAAGG 11561 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | |||||||| || ||||| || || ||||||||||| || ||| | ||||| ||||| Sbjct 11562 GATTTTCTTTTCTGGAAGTTTTGCGGCTATATTTTGGCTTAAAAAAAGGGGCCTAATGCC 11621 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 || ||||||||||| ||||| | || || || ||||| Sbjct 11622 TGGTCTGACTTTCAGTAACGAATTAATATCTAGAGACGA 11660 >seq27620 Length=20860 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || ||||| || || ||||| || || || |||| || || |||||| || | Sbjct 18059 TGTTCAATGCCATTGAAACAATGCCTTGTGTAAAGAAGAAAGCGGACTGGGCGTTGAAAT 18118 Query 117006 GGATCGCCGG-CAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||| || | || || | | | || | || || | | || || || |||||||| Sbjct 18119 GGATAGCTGATCAAAGCG-CTACTTTTGCTGAACGGGTCATTGCGTTTGCTGCCGTCGAA 18177 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || | |||||||| || || || || || ||||| ||||| || || | ||||| ||| Sbjct 18178 GGTATTTTCTTTTCCGGAAGCTTTGCTGCGATATTCTGGCTTAAAAAGAGAGGCCTAATG 18237 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 || || ||||||||||| || || || || || || ||||| Sbjct 18238 CCTGGACTGACTTTCAGTAATGAACTGATATCAAGAGACGA 18278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514832128695520