Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4462 140 2e-28 >seq4462 Length=45351 Score = 140 bits (154), Expect = 2e-28 Identities = 239/343 (70%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || ||||| || |||||| | || | ||||| || || || ||||| ||||| || || Sbjct 38838 GTAACATGAGCAATCATATACGTGAGCAGAGAGTAACTGGCGATGTTGAAAGGTACACCA 38779 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || |||||||| || |||| |||||| | ||||| || || | |||| | | ||| Sbjct 38778 AGACCCATATCGGCAGATCGTTGATACATTTGACACGATAGTTCGCCATTAACTGCGTAA 38719 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296 ||||| ||| ||||| || || || |||||||| || | ||| | | ||||||| Sbjct 38718 AACTGCACCAAGCAGTGACACGGAGGTAAGGCCATTTTAGGTAAATCAATGGGATTCCAA 38659 Query 97297 GCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGT-ATGGTATTAATTATCTGCTT 97355 || || | | ||||||||||| || ||| || | | | || || | || | | | Sbjct 38658 GCGCATAGGATTATTCTTCTATC-GTCGGGATTATTTTTAATCGTGTCTATGACGTTTTG 38600 Query 97356 TAATTGATCAACGCCT---TCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCC 97412 | |||||| | |||| | | | || | ||||| | | ||| || || ||||| Sbjct 38599 AAGTTGATCGATGCCTTTGTTTGTATAATCAGTGTGC---ATATCTTTGTACTCGGCTCC 38543 Query 97413 AAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 |||||| ||||||||||| || |||||||| ||||| || ||| Sbjct 38542 AAAATGTCTCCATTGGAACCCGTAAACAGGACCAAGATCACCT 38500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346529983104140