Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq37708 116 4e-21 seq55436 107 2e-18 seq32236 104 3e-17 seq15280 104 3e-17 seq48073 100 3e-16 seq26840 87.8 2e-12 >seq37708 Length=8338 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || ||||| ||||||||||| || || ||||||||||| || || | Sbjct 3959 CCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAG 4018 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| |||| || || || ||||| ||||| || | || |||||||||| || Sbjct 4019 AGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGA 4078 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| || | | ||| |||| | |||| | | | ||||||||| | || || Sbjct 4079 ATTCCCTCTTTAT-CTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGAC 4137 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||||||||| || || | || ||||| || |||||||| Sbjct 4138 TTCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| ||||| ||||| || ||||||||||||||| ||||| | || || | | Sbjct 3287 CGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGTTCTACCA 3346 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || || ||||| || | || | | || ||| Sbjct 3347 TCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACCTTCTTTG 3406 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || |||||| || | | | | ||| ||||| | || || |||| |||||| Sbjct 3407 TCTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGGGTGATG 3466 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || | |||||| || ||||| ||||| Sbjct 3467 GTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| || | |||||||||| ||| ||||||||||| || ||||| | Sbjct 3503 CCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAA 3562 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || || || || ||||| || || || |||||||||| || Sbjct 3563 AGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGA 3622 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| || | | ||| |||| | |||| | | | ||||| || | || || Sbjct 3623 ATTCCCTCTTTAT-CTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTAC 3681 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||| ||||| || | || || || ||||||||||| Sbjct 3682 TTCTAACGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| || || || || | || || | |||| || || || || |||||||| Sbjct 4907 TCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAG 4966 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || ||||| |||| || | || || || || |||||| ||||| | Sbjct 4967 ATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTTT 5026 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||||| || || |||| ||||||||||| || || | ||| || ||| Sbjct 5027 TCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACA 5086 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||||||| Sbjct 5087 AAGATCTGCATTTTT 5101 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || || | ||||||||| || || ||| ||||| || |||||||| | Sbjct 4187 CCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAG 4246 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || | || ||||| ||||| ||||| || |||||||||| || Sbjct 4247 AGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 4306 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| || || ||| |||| | || | | | | |||||||| | || || Sbjct 4307 ATTCCCTCTTTATCT-TGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAAC 4365 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || |||||||| || | || || || ||||||||||| Sbjct 4366 TTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| ||||| | ||||||||||| || || ||||| ||||| ||||| | | Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGAC 4702 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | |||| | || || ||||| || || || || || | || || ||||||| || Sbjct 4703 AAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGG 4762 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || ||||| |||||| || | | | | |||||||| | || || Sbjct 4763 ATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACT 4822 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || |||||||| || | || ||||| || |||||||| Sbjct 4823 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 >seq55436 Length=6824 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 6024 ATGCAAAAAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 6083 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||||||| Sbjct 6084 TACTTACCACTATACTACCGAGGA 6107 >seq32236 Length=13731 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 715 AAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 774 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 775 TACCACTATACTACCGAGGA 794 >seq15280 Length=11941 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 9083 AAAAAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 9142 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 9143 TACCACTATACTACCGAGGA 9162 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 9284 AAAAAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 9343 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 9344 TACCACTATACTACCGAGGA 9363 >seq48073 Length=7537 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| | |||||| || || || | || ||| |||||||| |||||||| Sbjct 6512 TCCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCT 6453 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || |||| || | ||| || || ||||| || | ||||||||||||| || Sbjct 6452 CAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGG 6393 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || || || ||| ||| |||| | ||||| | | | ||| || || ||| | Sbjct 6392 AATGCCTTCTTTATCC-TGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTA 6334 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || |||||||| || |||| ||| || ||||| |||||||| Sbjct 6333 CTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| || |||||||| | || || ||||||||||| ||||| ||||| || | Sbjct 6272 ACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCC 6213 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | ||| ||||| ||||| || | || ||||||||||| || | | || || Sbjct 6212 GTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTT 6153 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || || || ||||| | | | |||||| || |||||| || | ||||| Sbjct 6152 ATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGAT 6093 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || ||||| || ||||| |||||||| Sbjct 6092 GGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||| | ||| || |||||||||||||| || || ||| || | Sbjct 5588 ACGCAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCC 5529 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | ||| || || ||||| || | ||||||||||||| || | | || ||| Sbjct 5528 GTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATAC-CTTCTT 5470 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | ||| |||| | ||||| | | | |||||| || ||| || || | |||| Sbjct 5469 TATCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGA 5410 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| || || || || || || ||||| || ||||| || Sbjct 5409 TGGTCTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTT 5370 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| || |||||||| | || ||| |||||||| |||||||| | Sbjct 6967 CCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTC 6908 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || | ||| |||||||| || || | |||||||||||| | ||| Sbjct 6907 AGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGG 6848 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || || ||| ||| |||| | || | | | | || ||| || ||| || Sbjct 6847 ATTCCTTCTTTATCC-TGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTAC 6789 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||| || || || || || | || || || || ||||||||| Sbjct 6788 CTCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 >seq26840 Length=14082 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTG 60140 |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGATTG 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571388007732560