Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq37708 111 2e-19 seq8389 107 3e-18 seq48073 98.7 1e-15 seq28516 98.7 1e-15 seq14965 86.0 9e-12 >seq37708 Length=8338 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| |||||||| || || ||||| || ||| || ||||||||||| || Sbjct 3275 CCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGA-ATATTATAATCCGA 3333 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||| | ||| || | || ||||| || ||||| | | ||||||||||||||| Sbjct 3334 AAGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGG 3393 Query 146170 AATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 3394 GATACCTTCTTTGTCTTG 3411 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | || | |||||||| | || ||||| ||| || || |||||||| || Sbjct 3503 CCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGA-ATGTTATAATCGGA 3561 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | || ||| || | |||||| || || ||||| | | |||||| || ||||| Sbjct 3562 AAGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGG 3621 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||| ||||||||||| Sbjct 3622 AATTCCCTCTTTATCTTG 3639 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || || |||||||| || || |||||||| |||||||| || || Sbjct 3959 CCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAG 4018 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | || || | |||||| || || ||||| || | |||||| || || ||| Sbjct 4019 AGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGA 4078 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||||||||| Sbjct 4079 ATTCCCTCTTTATCTTG 4095 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||||||||| || ||||| || || ||||| || || ||||| | || || Sbjct 4205 ACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCTTCC 4264 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || || ||||| | | |||||| || ||||||||||| ||||||||||| Sbjct 4265 AATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTG 4323 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||||||||| || ||||||||||| ||||||||||| || Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGAC 4702 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || || | ||| || | ||||| || ||||| ||||| | ||| || || ||||| Sbjct 4703 AAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGG 4762 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 4763 ATGCCTTCTTTGTCTTG 4779 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| |||| | ||||| || | || |||||||| || ||||| || ||| Sbjct 4871 CCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAA 4930 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || | |||||||||||| || || | | ||||||||| ||||| Sbjct 4931 AGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGG 4990 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 4991 ATGCCTTCTTTATCTTG 5007 >seq8389 Length=28122 Score = 107 bits (118), Expect = 3e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | || |||||| ||||| || || |||||||| || || ||||| || Sbjct 12957 TCCTCCTCTTAATCGTAATACTAAATGCAACGTCGATTCTTTTTGAATGTTGTAATCAGA 12898 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||| | ||| || | |||||| ||||| |||||||| | ||| ||||| ||||| Sbjct 12897 AAGAGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCAGGAGG 12838 Query 146170 AATTCCT 146176 ||| ||| Sbjct 12837 AATGCCT 12831 >seq48073 Length=7537 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||||| ||||||||||| || |||||||| | ||||| || || || Sbjct 6721 ACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTCC 6662 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| || || |||||||||||||| || || || || |||||||| ||||| Sbjct 6661 AATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTG 6603 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | ||| |||||||| | ||||||||||| ||||||||||| Sbjct 6283 CCACCGCGGAGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTG 6224 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || || || || ||||| || || || |||||||| ||||| || || || Sbjct 6223 AGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 6164 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 6163 ATACCTTCTTTATCTTG 6147 >seq28516 Length=38763 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | ||| ||||||||||| |||||||||||||| || ||||| || || Sbjct 20550 TCCTCCTCTCAATCTCAATACCAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCGGA 20491 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | || || ||||| |||||||| | |||||| || ||||| Sbjct 20490 AAGGGTACGTCCATCTTCGAGCTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGG 20431 Query 146170 AATTCCT 146176 ||| ||| Sbjct 20430 AATGCCT 20424 >seq14965 Length=40354 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || |||||||||||||| || || ||||| || || | || ||||| ||||| Sbjct 33883 AGCTGGCGTCATTGACGAAGATTACAGGGGGAATGTAGGCGTGCTGTTGTTTAACCATTC 33942 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | || ||||||| || | || | ||||||| || || | ||| | || || || | ||| Sbjct 33943 TGATTCAGATTTTCTAGTCAAAAAAGGAGATCGAGTAGCCCAACTGATTTGCGAGAGAAT 34002 Query 10619 TTTATATCCTAA 10630 || |||| || Sbjct 34003 ATTCCATCCGAA 34014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742967807203840