Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq48073 100 2e-16 seq37708 95.1 8e-15 >seq48073 Length=7537 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || || ||||||||| || ||| |||| |||||||| || || ||||| Sbjct 5564 TTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCGTCTTCCAACTGTTTTCCGGCGAA 5505 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| | ||||||||||||| || | | || || || || ||| ||||| | || Sbjct 5504 AATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGAAT-TTTAGCTTTGACAT 5446 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | |||| || |||||| || | |||||||| || || || |||||||| | Sbjct 5445 TTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGGTCTTTCCAGTAAGAGTTTTAA 5386 Query 34377 CAAAGATCTGCATC 34390 |||| ||||||||| Sbjct 5385 CAAAAATCTGCATC 5372 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 ||||| || |||||||| ||| || ||| |||| |||||||| || || |||||| Sbjct 6475 TCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAA 6416 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | ||||||||||||| || | || || || || || ||| ||||| | | Sbjct 6415 ATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCCTGAAT-TTTAGCTTTGACGTT 6357 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| ||| | || ||| || |||| || |||||||| ||||| | ||||| || Sbjct 6356 TTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAAC 6297 Query 34378 AAAGATCTGCAT 34389 ||| || ||||| Sbjct 6296 AAAAATTTGCAT 6285 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || || || || ||| || |||| |||| |||||||| || || ||||| Sbjct 6248 TTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAA 6189 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | | |||||||||| || | | || || || |||||| ||||| | | Sbjct 6188 GATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGTATCTTG-GCTTTGACGT 6130 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | |||| || ||| || |||| ||||||||||| |||||||| ||||| | Sbjct 6129 TTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAA 6070 Query 34377 CAAAGATCTGCAT 34389 |||| || ||||| Sbjct 6069 CAAAAATTTGCAT 6057 >seq37708 Length=8338 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| |||||||| ||||| || |||||||| ||||| ||| | |||| Sbjct 4202 AGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCT 4261 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| || || || ||||||||||| || ||||||||| || | | ||| || || Sbjct 4262 TCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCT 4321 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||||| || | || | ||| | | || || || | || || ||| Sbjct 4322 TGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACTTCGAGGGTAATCGTT 4381 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | |||||||| ||||| ||||| Sbjct 4382 TTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322835351981120