Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq39349 140 3e-28 seq27620 87.8 2e-12 >seq39349 Length=17693 Score = 140 bits (154), Expect = 3e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTT 16314 ||||||| ||| |||||| ||||| ||||| || ||||| |||||||| || | ||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAA--GTCAGACCAGGCATTAGGCCCCTTTT 11605 Query 16315 TTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAA 16374 ||||| |||||||||||| ||||| ||||||||||| || ||||| || || ||||| Sbjct 11604 TTTAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAA 11545 Query 16375 TGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatt 16434 |||| | || ||| || | || || | | |||||||| || ||||| | Sbjct 11544 CGCAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTC 11485 Query 16435 tgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAT 16484 ||||||| ||| ||||| |||| | || ||||||||||||| | ||| Sbjct 11484 TGCTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGAAAAT 11435 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 |||||||| || || | ||||| ||||| |||||||| | ||| || |||| ||| ||| Sbjct 11339 ATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGTTATTTGA 11280 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || || ||||| |||| ||||||| ||||| || || | |||| | ||| | ||| Sbjct 11279 AACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTCGACCAAG 11220 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 ||||| || || || || || ||||||||||| || | | ||| ||| || ||| Sbjct 11219 TTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAATGAATTTT 11160 Query 16685 ttttC 16689 |||| Sbjct 11159 CTTTC 11155 >seq27620 Length=20860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 15930 ACATAACTG-ACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||| ||| || ||| ||| ||||| | |||||| || || |||||||| ||||| || Sbjct 18751 ACATTACTCCACTTTTCTTG-TATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCA 18693 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 | || ||||||||||||||||||||||| ||||||| Sbjct 18692 TTCAAAGAAATATTTTCCATAAAATCAAATGGATTTT 18656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462164526297200