Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq39349 116 4e-21 seq27620 104 2e-17 >seq39349 Length=17693 Score = 116 bits (128), Expect = 4e-21 Identities = 160/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 || |||||| || | |||||| ||||| || | || ||||| | || | ||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAA--GTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||| || || || ||| |||||||| || || || || |||||||||| Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | || | || |||||||| | || || | | || ||||||| || ||||| || | Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 |||| |||| | | || ||| |||||||| |||||||||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATA 11441 Score = 109 bits (120), Expect = 5e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || || || ||||| | || || ||||| || || |||| ||||| || | ||| ||| Sbjct 11339 ATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGTTATTTGA 11280 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593 || || |||||| |||| ||||| | ||| |||||| | |||| | |||| |||| Sbjct 11279 AACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTCGACCAAG 11220 Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14653 |||||||| || ||||| ||| |||||||||||||| || | | | ||| || | | Sbjct 11219 TTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAATGAATTTT 11160 Query 14654 TGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCT 14693 ||||| | ||||||| |||||| ||||||| Sbjct 11159 CTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATCCT 11120 >seq27620 Length=20860 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 14240 ATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 14297 || ||||| || ||||| || | ||| ||||| | |||| ||||| | ||| |||| Sbjct 18266 ATCAGTTCATTACTGAAA--GTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATA 18209 Query 14298 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14357 | ||||| || |||||||||||| || || || || ||||||||||| || | |||| Sbjct 18208 TCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTT 18149 Query 14358 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 | |||| | || ||| | | ||||||||| ||||| || | ||| || || | Sbjct 18148 CAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTA 18089 Query 14418 TAAAATCCATTGTTTCAATAGCATTAAA 14445 | || |||||||||||| ||||| || Sbjct 18088 CACAAGGCATTGTTTCAATGGCATTGAA 18061 Score = 104 bits (114), Expect = 2e-17 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 13844 TTCAATAAAAACTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAA-AT 13902 ||||| || ||||||||||| | |||||| || |||| ||| | | | ||| || Sbjct 18806 TTCAAGAAGAACTAAAAATCGGCGTCTAACTTGAATTCATTTTCGCCACT-TGGGAACAT 18748 Query 13903 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAG 13962 || || |||| | ||||| | ||||||||| || ||||| || |||||||| | || Sbjct 18747 TACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCATTCAA 18688 Query 13963 TGATATATTTTCCATAAAATCAAATGGATTT 13993 || ||||||||||||||||||||||||||| Sbjct 18687 AGAAATATTTTCCATAAAATCAAATGGATTT 18657 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 || ||| || || || | |||||| ||||| || || |||| ||||| || | || || Sbjct 17970 AACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGTGATTTG 17911 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAA 14592 ||| || ||||| |||| ||||||| ||| || ||| | || | ||| | || Sbjct 17910 AAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTCGACTAA 17851 Query 14593 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 ||||||||| || ||||||||| || ||||||||||| || | || | ||| || | Sbjct 17850 ATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAATGAATTT 17791 Query 14653 TTGCTCTTCATTGCTGAGTTTTTTCCAATC 14682 || ||||| | ||||||| |||||| Sbjct 17790 TTTTTCTTCGGGTTTCAGTTTTTGCCAATC 17761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481983225809360