Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq37708 129 4e-25 seq48073 96.9 3e-15 >seq37708 Length=8338 Score = 129 bits (142), Expect = 4e-25 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| || |||| |||||| |||||||||||||| ||||| ||||| | | ||| || Sbjct 4880 AGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTA 4939 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| | |||||| || || |||| || | ||| ||||| || | |||||| Sbjct 4940 CCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCT 4999 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| |||| | || ||||| | | | | |||||| | ||||| ||| | ||| Sbjct 5000 TTATCTTGGATTT-TCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGT 5058 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||| |||| || ||||| ||||| ||||| || ||||||||| Sbjct 5059 GATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCATTTTT 5101 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| |||||||||||||| |||||||| || | | ||| ||| |||| Sbjct 4430 AGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCCGAAAGGGTTCTACCATCT 4489 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || |||| || | ||| ||||| || | |||||||||||| Sbjct 4490 TCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCTTCCTTATCT 4549 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | | ||| ||||||| |||||| ||| | ||||| | Sbjct 4550 TGAATTTTCGCCTTGACATTTTCAATCGTGTCACTAGGCTCGACTTCCAATGTGATAGTC 4609 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| || || || || || ||||| Sbjct 4610 TTACCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| || | || ||||||||||| || || || |||| || || | | |||| Sbjct 4658 AGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCT 4717 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| |||| | | |||||| || || | |||||| || || Sbjct 4718 TCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCT 4777 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | | | |||||| | |||||| ||| | ||| || || Sbjct 4778 TGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACTTCGAGGGTAATCGTT 4837 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| |||||||| ||||||||||| Sbjct 4838 TTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || ||||| ||||||||||| || |||| | || | |||| Sbjct 3518 AGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATCT 3577 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| || | ||||| | ||| || || || | || || ||||| Sbjct 3578 TCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCT 3637 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | | | | ||||||| |||||| ||| | |||||| | Sbjct 3638 TGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGTC 3697 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| ||||| || || |||||||| Sbjct 3698 TTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | || ||| |||| || | || || |||||||| |||||||| |||| Sbjct 4187 CCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAG 4246 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| |||||||||||||| || || | || || | ||| || || || Sbjct 4247 AGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 4306 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || || ||||| ||||| ||| || | | | | ||||| | ||||| | Sbjct 4307 ATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACT 4366 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| || ||||||||||||| ||||| || || |||||||| Sbjct 4367 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||||||||| || ||||| | | || ||| ||||| | |||||| || Sbjct 3989 GTCGATTCTTTTTGAATATTATAGTCCGAGAGAGTCCTACCGTCTTCGAGTTGTTTACCG 4048 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || | || | | ||| || || ||| | || || ||||| ||||| |||| Sbjct 4049 GCGAAAATTAAACGTTGCTGGTCGGGGGGAATTCCCTCTTTATCTTGAATTTTGGCCTTG 4108 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | | | ||||| | |||||| ||| | |||||| |||| || ||||| ||| Sbjct 4109 ACATTTTCGATCGTGTCGCTTGGCTCGACTTCGAGTGTGATGGTTTTTCCTGTCAAGGTT 4168 Query 18309 TTTACAAAAATTTGCAT 18325 ||||| ||||||||||| Sbjct 4169 TTTACGAAAATTTGCAT 4185 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 || ||| || | || || || |||||||| || ||||||||||| | | ||| | | Sbjct 3742 TCGAAGAACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAGAGAGTTCTTCC 3801 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | |||||| || || |||| || | ||||||||| || | ||||| || Sbjct 3802 ATCTTCGAGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCTTT 3861 Query 18230 ATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288 || |||| | || || || | | | | || || | |||||| ||| | |||| Sbjct 3862 GTCTTGGATTT-TGGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGTGTGA 3920 Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||| ||||| || || ||||| ||||| ||||| Sbjct 3921 TTGTTTTACCGGTTAACGTCTTTACGAAAATCTGCAT 3957 >seq48073 Length=7537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| ||||| ||||||||||||||||| ||| || ||| | |||||||| || Sbjct 6488 GTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCTTCCAACTG 6429 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || || | || | | || || || || | |||||| ||||| ||||| Sbjct 6428 TTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCCTGAATTT- 6370 Query 18242 TTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | |||| ||| | | ||| || ||| || || ||| | ||| ||| |||| |||| Sbjct 6369 TAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTTTACCGG 6310 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||| |||||||||||||| Sbjct 6309 TTAACGTTTTAACAAAAATTTGCAT 6285 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| || || |||| || || || |||||||| |||||||| || ||| Sbjct 6740 TCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCT 6681 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||||||||||| || || |||| | |||||| || || || Sbjct 6680 CAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGG 6621 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || || || | | ||| || || || || Sbjct 6620 GATACCTTCTTTGTCTTGAATTT-TGGCTTTCACATTTTCAATGGTATCGGACGGTTCAA 6562 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| |||| || ||||| ||||||||||||||||||||| Sbjct 6561 CCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| || || |||| ||||| || |||||||| |||||||| || ||| Sbjct 5828 TCCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCT 5769 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | ||||||||||| || || || |||| | ||||||||| || || Sbjct 5768 CAAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGG 5709 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||| || ||| | | || || || | | | || || ||||| Sbjct 5708 GATGCCTTCCTTGTCCTGAATCT-TAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTA 5650 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| ||||| || || || || ||||||||||| Sbjct 5649 CTTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||| || |||||||||||||| ||||||||| || || | |||||| Sbjct 5581 ACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCGTCTTCC 5522 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || ||||| || || | || | | || || || || | ||||| ||||| | Sbjct 5521 AACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTATCTTGA 5462 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || ||||| | | ||| ||||| || ||| ||| | ||||||| | || Sbjct 5461 ATTT-TAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGGTCTT 5403 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 || || | ||||| |||||||| ||||| || ||| Sbjct 5402 TCCAGTAAGAGTTTTAACAAAAATCTGCATCTTGAAA 5366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379066133127990