Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4462 181 9e-41 seq48073 161 9e-35 seq37708 145 7e-30 seq27620 125 6e-24 seq15454 95.1 1e-14 seq3858 82.4 7e-11 >seq4462 Length=45351 Score = 181 bits (200), Expect = 9e-41 Identities = 310/445 (70%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 23279 CCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCA 23338 || ||||||||| || ||||| ||| | |||||||| | |||||| || || | Sbjct 16580 CCCTAACAGTCGAACAATCCGGGACATTCGTTGGGACACATTAAACTCCATTTTTCGTTA 16639 Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 |||||||||||||||||||| ||| || |||||||| |||||||| | || | ||| Sbjct 16640 TTTTCAACGCGTCTCATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCG 16699 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA--TCCAAAAAGTCCAACACGTCCGCAT 23456 || || ||||| || | || |||||| || || || || || || | || | || Sbjct 16700 CGAGATTCTTCTTTACCAGAGT--TTTTTCGAAGCTCTAAGAAATCAAAAATATCGGAAT 16757 Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516 |||| || || | |||||| || || ||||| ||||| || ||||| || |||||||| | Sbjct 16758 GCCAAGGTTCCAAGTAAACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACAT 16817 Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576 | | ||| ||||| || || || | ||||||||||||||||| || || | ||| | Sbjct 16818 ATCTGGCTGTGTTATTATATACCCGAAGCATCGGCACGAGACCATTTGATACACCG--TT 16875 Query 23577 CGCCCGCCACACTCGAACCTTTTG---CTCGAACGTTGTGAACGTGGAAACCTATGCCTC 23633 | || | || | | | |||| ||| | | || | || ||||| | || | Sbjct 16876 TGTCC-CAGCAATGTAGCTGTTTGTACCTCTGATGCAATGTATATGCAAACCAACTCCAC 16934 Query 23634 CGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGT 23693 | | ||||| || ||||| ||||| | | ||||||| | | || || ||||| |||| Sbjct 16935 CAGCTGATTTAGAAATCATAGCGCAATTCGTTAGAGTGTGGAATATACCTTCGATACTGT 16994 Query 23694 CCTCTTTGGTCGCGACCAAGAAACA 23718 | |||| | || || | |||||| Sbjct 16995 CGTCTTCCATGGCTACGAGGAAACA 17019 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || ||||| |||||| || || || ||| || || || || || ||||||||||| Sbjct 15485 ACCTGAAATTCGCCGCTCAGTACTCGTCGTAAATACATATTCGAAGTATACGGTTCGAAA 15544 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 |||||| ||||| | |||||||| |||||||| || |||||||| || | ||| || Sbjct 15545 CTTTCATTATTTCCTAAAATCTGAGCAGTCGAAGCCGTTGGCATCGGAGCTAGCAGGAGT 15604 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCG 22639 || || | | |||| || | ||||| || |||| ||||| | ||| | | | Sbjct 15605 GAATTGCGAACACCGTATTTGGCGATTTTTTCTTTCAGCAGAGACCAATTCCATAAAGAG 15664 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 | ||| | || || ||||||||| || ||||| Sbjct 15665 GTAGGCTTTAC---GTTCCACATATCATACTGCAA 15696 >seq48073 Length=7537 Score = 161 bits (178), Expect = 9e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| |||| || || ||||| || | || || ||||||||| Sbjct 6741 ATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACGATTACGCTGGAGGTAGAACCGTCC 6800 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| || || | ||| ||| || ||||| | ||||| |||||| Sbjct 6801 GATACTATCGAAAACGTGAAGGCCAAAATTCAGGATAAAGAAGGAATCCCGCCTGACCAG 6860 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| ||||||||||||||| | ||| |||||||||| ||| Sbjct 6861 CAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTCGTACTCTGAGCGATTACAAC 6920 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||| ||||| |||||| |||| Sbjct 6921 ATTCAAAAAGAGTCGACCCTTCATTTGGT 6949 Score = 149 bits (164), Expect = 6e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || || ||||| || || || || |||||| | || || |||||| Sbjct 5370 AAGATGCAGATTTTTGTTAAAACTCTTACTGGAAAGACCATCACCTTAGAAGTCGAACCG 5429 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | |||| |||||| | ||| || || ||||| | || |||||| Sbjct 5430 TCCGACACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGAC 5489 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| |||| ||||| || ||||||||||||||| ||| ||||||| || Sbjct 5490 CAGCAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGACGTACTTTGAGCGACTAC 5549 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || |||||||||||||| || |||||| |||| Sbjct 5550 AATATTCAAAAAGAATCCACCCTTCATTTGGT 5581 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| |||||| | || || ||||||||| Sbjct 6057 ATGCAAATTTTTGTTAAAACGCTCACCGGAAAAACCATCACCTTGGAAGTGGAACCGTCC 6116 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | ||| || || ||||| | || ||||||||| Sbjct 6117 GACACCATCGAAAACGTCAAAGCCAAGATACAAGATAAAGAAGGTATCCCACCCGACCAG 6176 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || ||||||||||||||| ||| | ||||||||||| Sbjct 6177 CAGAGATTGATCTTCGCCGGTAAACAGTTGGAAGACGGCCGTACTCTCAGCGATTATAAT 6236 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||||||||| || || ||| |||| Sbjct 6237 ATTCAAAAAGAATCTACCCTCCATTTGGT 6265 Score = 141 bits (156), Expect = 8e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || | || || ||||| || ||| | || || |||||||| Sbjct 6285 ATGCAAATTTTTGTTAAAACGTTAACCGGTAAAACCATTACCCTGGAAGTAGAACCGTCT 6344 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| ||| || |||||| | || ||||||||| Sbjct 6345 GATACGATTGAAAACGTCAAAGCTAAAATTCAGGATAAAGAAGGCATTCCACCCGACCAG 6404 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| |||| ||||| || ||||||||||||||| ||| |||||||||| ||| Sbjct 6405 CAGCGGTTAATTTTCGCCGGAAAACAGTTGGAAGACGGCCGAACTTTGAGCGATTACAAC 6464 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 ||||||||||| || || ||||| Sbjct 6465 ATTCAAAAAGAGTCAACCCTTCA 6487 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| ||| |||| || ||||| || || | || |||||||||||| Sbjct 6513 ATGCAAATTTTTGTAAAAACTTTGACTGGTAAAACCATTACGTTGGAGGTTGAACCGTCC 6572 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||| ||||| | || ||||||||| Sbjct 6573 GATACCATTGAAAATGTGAAAGCCAAAATTCAAGACAAAGAAGGTATCCCACCCGACCAG 6632 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| || ||||| ||||||||| ||| |||||||||||||| Sbjct 6633 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGCCGAACTTTGAGCGATTATAAC 6692 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAG 31407 ||||| |||||||| || || ||| |||| || || Sbjct 6693 ATTCAGAAAGAATCTACGCTACATTTGGTGCTCAG 6727 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || ||||| || || | || || || |||||| Sbjct 5601 ATGCAAATTTTCGTCAAGACGTTAACCGGTAAAACCATTACGTTGGAAGTAGAGCCGTCC 5660 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| |||| | || | || || ||||||||||||| | || |||||||| Sbjct 5661 GATACCATCGAGAACGTTAAAGCTAAG-ATTCAGGACAAGGAAGGCATCCCACCCGACCA 5719 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | | || ||||| || || || ||||||||| ||| ||||||||||||| Sbjct 5720 ACAAAGATTGATCTTCGCCGGGAAGCAATTGGAAGACGGCCGAACTTTGAGCGATTATAA 5779 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAG 31407 |||||| |||||||| || |||||| |||| || || Sbjct 5780 CATTCAGAAAGAATCTACGCTTCATTTGGTGCTCAG 5815 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| |||| || || || || || | || || ||||| || Sbjct 5829 ATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATTACGCTGGAGGTAGAACCATCA 5888 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || ||| || ||| || || ||||| | || ||||||||| Sbjct 5889 GATACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAG 5948 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || |||| |||||||||||||| || |||||| || ||||||| || || Sbjct 5949 CAACGATTAATTTTCGCTGGCAAACAATTAGAAGACGGACGTACCTTGAGCGACTACAAT 6008 Query 31373 ATTCAAAAAGAATCGACTCTTCAT 31396 || || |||||||| ||||||||| Sbjct 6009 ATCCAGAAAGAATCCACTCTTCAT 6032 >seq37708 Length=8338 Score = 145 bits (160), Expect = 7e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || || || |||| || ||||| |||||| |||| || || || Sbjct 5101 AAAAATGCAGATCTTTGTTAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTAGAGCC 5042 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 | ||||| | |||||| |||||| || ||| || || |||||| | || ||||| Sbjct 5041 GAGCGACACTATCGAAAACGTCAAAGCGAAAATCCAAGATAAAGAAGGCATCCCTCCCGA 4982 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||| ||||| || |||||||| ||||| | |||||| || || | || || Sbjct 4981 TCAGCAACGTCTCATCTTCGCTGGAAAACAACTCGAAGACGGTAGAACCCTTTCGGACTA 4922 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| ||||||||||| || ||||| |||| || ||||||| ||||||| Sbjct 4921 TAACATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGACTGAGAGGCGGTA 4869 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || |||| ||||||||||| ||| |||| ||||| || | Sbjct 4413 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTTGAGCCTAGC 4354 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| || || || || | || ||||||||| Sbjct 4353 GACACCATCGAAAATGTAAAGGCTAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 4294 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || ||||| ||||||||| || || | |||||| ||| Sbjct 4293 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGACGGTAGAACGCTCTCCGATTACAAC 4234 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||||||| |||||| | ||| |||| ||| || ||||||| |||| Sbjct 4233 ATCCAAAAAGAGTCGACTTTACATTTGGTGCTTCGATTGAGGGGAGGTA 4185 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || |||| ||||||||||| ||| |||| || || || | Sbjct 4869 ATGCAAATTTTCGTAAAAACCTTGACCGGCAAAACGATTACCCTCGAAGTCGAGCCTAGC 4810 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || || | ||| ||||| |||||| | || |||||||| Sbjct 4809 GACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAAGAAGGCATCCCTCCCGACCAA 4750 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || || ||||||||| | ||||| | ||| || ||||||||| Sbjct 4749 CAACGTTTGATCTTTGCCGGCAAACAGCTCGAAGATGGAAGGACCTTGTCCGATTATAAT 4690 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| || | ||| ||||||| | |||| || |||| Sbjct 4689 ATCCAAAAAGAATCTACGTTGCATTTGGTACTCCGTTTGAGAGGTGGTA 4641 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || ||||||| ||||| ||||| |||| || || || | Sbjct 4185 ATGCAAATTTTCGTAAAAACCTTGACAGGAAAAACCATCACACTCGAAGTCGAGCCAAGC 4126 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | ||| || || || || | || ||||||||| Sbjct 4125 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCCGACCAG 4066 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| ||||| || ||||| | |||||| || |||| | || ||||| Sbjct 4065 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGTAGGACTCTCTCGGACTATAAT 4006 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||||||||| | ||| |||| | || |||| ||||||| Sbjct 4005 ATTCAAAAAGAATCGACGTTGCATTTGGTTTTGCGATTGAGAGGCGGTA 3957 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || ||||| | || || || || Sbjct 4641 ATGCAGATATTCGTCAAGACCTTGACTGGTAAGACTATCACATTGGAAGTCGAGCCTAGT 4582 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| || ||| || ||||||||| | |||||||| ||| Sbjct 4581 GACACGATTGAAAATGTCAAGGCGAAAATTCAAGATAAGGAAGGCATTCCGCCCGATCAG 4522 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || |||||| | ||||| || || | ||||| ||| Sbjct 4521 CAACGTCTCATCTTCGCCGGTAAACAGCTCGAAGATGGTAGAACCCTTTCGGATTACAAC 4462 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| || ||||| |||| || || | || ||||||| Sbjct 4461 ATCCAAAAAGAATCAACCCTTCACTTGGTTCTCCGATTAAGAGGCGGTA 4413 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||||||||| | || || ||||| ||||| |||| || || || | Sbjct 3957 ATGCAGATTTTCGTAAAGACGTTAACCGGTAAAACAATCACACTCGAAGTCGAGCCTAGC 3898 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || ||| | ||| ||||| ||||| | || ||||| || Sbjct 3897 GATACGATCGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCCGATCAA 3838 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || ||||| | ||||| | ||| | || || ||| Sbjct 3837 CAACGTCTCATCTTCGCCGGTAAACAACTCGAAGATGGAAGAACTCTCTCGGACTACAAC 3778 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| ||||| ||| | || ||| || |||| || |||| Sbjct 3777 ATCCAGAAAGAATCCACTCTGCATTTAGTTCTTCGATTGAGAGGTGGTA 3729 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || |||| ||||| || ||||| | || || || || Sbjct 3729 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACCATCACGTTAGAAGTAGAGCCCAGT 3670 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | ||| || || || || | || ||||||||| Sbjct 3669 GACACCATCGAAAACGTCAAGGCCAAAATTCAAGATAAAGAGGGAATTCCTCCCGACCAG 3610 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| |||||||| | ||||| || | |||||||||| Sbjct 3609 CAACGTCTTATTTTCGCCGGCAAACAACTCGAAGATGGCCGTACCCTTTCCGATTATAAC 3550 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || || ||| |||| || || | || || |||| Sbjct 3549 ATTCAAAAGGAATCCACCCTGCATTTGGTTCTCCGATTAAGAGGTGGTA 3501 >seq27620 Length=20860 Score = 125 bits (138), Expect = 6e-24 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 57634 AGGATCTGAGCGATTGGGATTCCCTCAAA---GAATCTGAGAGAAATTTTATTAAACACG 57690 ||||||| || |||||| | || ||| ||| || | ||| || ||| ||||| Sbjct 17750 AGGATCTCAGAGATTGGCAAAAACTGAAACCCGAA---GAAAAAAAATTCATTTCACACG 17806 Query 57691 TGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTT 57750 | || || ||||| || ||||| ||||||||||| || || ||||| ||||| | || | Sbjct 17807 TTTTAGCATTTTTTGCGGCATCTGATGGTATTGTCAATGAAAATTTAGTCGAGCGTTTCT 17866 Query 57751 CACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAA 57810 |||||||| ||| | | || || |||| |||||||||||||||| | |||| |||| Sbjct 17867 TTCAAGAAGTTCAAATTCCAGAAGCCAGATTCTTTTACGGATTTCAAATCACCATAGAAA 17926 Query 57811 ACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | || ||||| || ||||| || | || || || ||||| ||||| Sbjct 17927 ATGTACATTCCGAGATGTACAGCTTATTGATAGACACCTACGTTAAGGA 17975 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 |||||||| || || ||||||||||| | ||||| || || ||| | | ||| Sbjct 18058 CTGTTCAATGCCATTGAAACAATGCCTTGTGTAAAGAAGAAAGCGGACTGGGCGTTGAAA 18117 Query 57939 TGGATAAAAAGCGCCACG-GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 |||||| | | | | || || || || || || | || ||||| || |||||||| Sbjct 18118 TGGATAGCT-GATCAAAGCGCTACTTTTGCTGAACGGGTCATTGCGTTTGCTGCCGTCGA 18176 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 |||||| |||||||| || |||||||| || ||||| ||| | || || | ||||| || Sbjct 18177 AGGTATTTTCTTTTCCGGAAGCTTTGCTGCGATATTCTGGCTTAAAAAGAGAGGCCTAAT 18236 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||| || ||||| || || || || ||||||| | ||||| Sbjct 18237 GCCTGGACTGACTTTCAGTAATGAACTGATATCAAGAGACGA 18278 >seq15454 Length=877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || ||||| ||||| |||| || ||||| || Sbjct 35 ATGCAGATTTTCGTGAAAACCCTTACGGGTAAAACTATCACTCTCGAAGTCGAACCTTCG 94 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| || |||||||| | || ||||||||| Sbjct 95 GATACGATAGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCCGACCAG 154 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||| |||| ||||| || || || |||||||| Sbjct 155 CAACGTTTAATCTTCGCCGGAAAGCAATTGGAAGA 189 >seq3858 Length=10210 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 ||||||| ||||| || || |||||| ||||| |||| | ||| | | || Sbjct 6216 GTAGCGGAACTGAACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTA 6157 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 ||||| ||||| || || || || ||||| ||||| || || | ||||| ||||||| | Sbjct 6156 TACGTATCGATCGCTGCGTCGATATCCTCACCGTGAATTCCCACAGCGACTCGCATCAAC 6097 Query 23861 ATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGA 23910 |||| || ||||| ||||| ||||||||||| || | ||| || Sbjct 6096 ATGTGCTGTGGTCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGA 6047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445431506847840