Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq39349 156 5e-33 seq27620 141 1e-28 seq4462 131 2e-25 seq3858 113 6e-20 >seq39349 Length=17693 Score = 156 bits (172), Expect = 5e-33 Identities = 169/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 ||||||||| |||||||||||| || || || || ||||||||||| | |||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||| | || || ||| |||||||| || ||||| || |||||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 33726 ATAAGTCTCTCTCCATAACCGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | |||||||||| || ||| ||| || |||||| || ||||| || || Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 || |||| ||||||||||| ||||| || |||||||| ||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 140 bits (154), Expect = 4e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | |||||| || ||||| | ||| ||||| || ||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || ||||| ||||| ||| |||| || |||| || ||||| ||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | || |||||||| || || || ||| |||||||||||| || || |||||| || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 || | | |||| || ||| | ||||| | |||||| ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 >seq27620 Length=20860 Score = 141 bits (156), Expect = 1e-28 Identities = 165/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 |||||||| || | ||| ||| || || ||||| ||||||||||| | ||||||| Sbjct 18278 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTA 18219 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| ||||| | ||| || |||||||||||| || ||||| || |||||||| ||| Sbjct 18218 AGCCAGAATATCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACGCA 18159 Query 33726 ATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | | || || || ||||| ||| |||||| || ||||| || || Sbjct 18158 ATGACCCGTTCAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCGCT 18099 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 ||||| |||||||||||||| ||||| |||||||| || ||| Sbjct 18098 TTCTTCTTTACACAAGGCATTGTTTCAATGGCATTGAACAGA 18057 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 ||| ||||| || || || ||||| | || ||||| || ||||| | ||||| |||| Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || ||||||||||| || |||| || || | ||| || |||||| | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||||||||||||| || || |||||| || |||||||| || || || ||| || Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 || | |||||| || ||| | ||||| | |||||| ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||||||||| || || ||||| ||||| || ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | || || | ||| | || | |||||||||||| || || || | ||||| Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 33530 AAATCTAACGGTTTCTT---CACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGC 33586 ||| |||||| |||||||| || | ||||||||||||||||||||||| Sbjct 18428 TTCGGTAA---TTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGC 18372 Query 33587 GAAATCGCAGTGCAGACCCT 33606 |||||| || | ||||| Sbjct 18371 AAAATCGGTATGTAAACCCT 18352 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 33277 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTT 33336 |||| ||||| |||| | |||||| || || | ||| ||||| ||||| ||||| || | Sbjct 18751 ACATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCAT 18692 Query 33337 CCAATGATATATTTTCCATGAAATCAAACGGATT 33370 ||| || ||||||||||| |||||||| ||||| Sbjct 18691 TCAAAGAAATATTTTCCATAAAATCAAATGGATT 18658 >seq4462 Length=45351 Score = 131 bits (144), Expect = 2e-25 Identities = 230/335 (69%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 ||||||| ||||| | || ||| || | | ||||| |||||||| | ||||| Sbjct 16558 ATACAATTTATCGAAATTTTCGCCCTAACAGTCGAACAATCCGGGACATTCGTTGGGACA 16617 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||| || ||| | | ||| || | || ||| ||||||| |||||| ||||| || Sbjct 16618 CATTAAACTCCATTTTTCGTTATTTTCAACGCGTCTCATAAACTCATCAGGGATCCATAG 16677 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 || |||| ||| || | | | ||| || || || | || ||| ||| || | Sbjct 16678 CGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTTACCAGAGTTTTTTCGAAGCTCTAA 16737 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418 ||| | | |||||| |||||||| ||||||||||| | || | | | || || | ||| Sbjct 16738 GAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTAAACTGCGAAAGCGCCGGGTCTTTT 16797 Query 63419 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 ||| ||||| ||||| | ||||| || ||||||||||| || | | ||| || | | Sbjct 16798 GTTGCCTCCTTGATCGACATATCTGGCTGTGTTATTATATACCCGAAGCATCGGCACGAG 16857 Query 63479 ACCGTTTGATATACCATTGGTACCGGAGATATAGC 63513 ||| ||||||| ||| || || || | || |||| Sbjct 16858 ACCATTTGATACACCGTTTGTCCCAGCAATGTAGC 16892 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 ||||||||||||||||||| | || || | ||| | ||||| || || ||||| | Sbjct 15066 TCCATCCGTAAAAATGCATCGATGAAAGATTCGCGTAAGTTGGATCAGCCATGTGGATGT 15125 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | | |||| ||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 15126 TTAAACTTTGAGATTGGTCGATAAACGCTCCTCTGTCTGCAGCCATTTTTAGAATCGTCT 15185 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAA 62262 | ||| |||||||| | ||||| |||| Sbjct 15186 TCTGTTTTATTTCCCATACGGTTTTGTAAA 15215 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 62604 CCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTA 62663 || |||||| | ||||||| || || ||||| || || || || ||| |||| | Sbjct 15771 CCTTTACTGACTGGCGATCCTTTGTAAGTTTCATAAGGACCGAACTGCTGAGCAAGTTCA 15830 Query 62664 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT 62723 ||||| ||||| || ||||||||||||||||||||||| |||| ||||||| ||| Sbjct 15831 CAACTTGCCTCCAAAGCACCGTAATAAATGGTTTCAAAAATCTGTATATTTAGTAATTGG 15890 Query 62724 GCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62783 | || | || || ||||| | | | ||||| ||| ||||||||||||| | Sbjct 15891 GATTGCTCACTCTCGAATGGCAGCCTCATCATGATAAATAAGTCGGCTAATCCTTGAATA 15950 Query 62784 CCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 || || || || || ||||| ||| ||| || Sbjct 15951 CCTATTCCAATCGGCCTATGCCTCAGATTCGA 15982 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 63657 CGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA--GAAA 63714 |||| |||| | ||||| ||||||||||||||||| || ||||| || ||||| || | Sbjct 17109 CGAGGAGTTGCAGCATTGAATAAGGTAGGAGAAGCATGGGTAAA--ATATTTCAACGACA 17166 Query 63715 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63774 || ||| || || ||||| || || || ||||| ||||| || || | || | Sbjct 17167 TTAAATTATAAGTTTCAATCGCCGAATCAATATCTTCGCCGTGAATACCGACAGAAACTC 17226 Query 63775 GCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATT 63834 |||| |||||||| || || | ||| ||||| | ||| ||||| || || || ||| Sbjct 17227 GCATCAACATGTGTTGTGGACGTTCGACAATACGATCGTTGATTTTTAATAAATACGATC 17286 Query 63835 TTTCCAAAGT 63844 | || || || Sbjct 17287 TCTCTAAGGT 17296 >seq3858 Length=10210 Score = 113 bits (124), Expect = 6e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 63675 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63734 || || ||||| || ||||| ||||| || |||| || | | || ||||| || || Sbjct 6204 AACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTATACGTATCGATC 6145 Query 63735 GCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 |||| ||| |||||| || | |||||||| || ||||| ||||| ||||||||||| || Sbjct 6144 GCTGCGTCGATATCCTCACCG-TGAATTCCCACAGCGACTCGCATCAACATGTGCTGTGG 6086 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 |||||| || | || ||| |||||||| || || || ||||| ||||| Sbjct 6085 TCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGACTTTTCTAAAGT 6035 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || ||||||||||| || |||| | || || || || ||||| ||||| | Sbjct 7923 TACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAA 7864 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || || |||||||| |||||||||||||| || || || |||||||| || | | ||| Sbjct 7863 GGATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAA 7804 Query 62507 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62542 ||| || | ||||||| | | ||||| ||||| Sbjct 7803 CGAATTCCTTACACCGTATTGTTTTATTTTTTCTTT 7768 Score = 86.0 bits (94), Expect = 8e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 64008 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATG 64067 || || | |||||| ||||| || |||| ||| || | || || | || |||| | Sbjct 5729 CTGAACATTTTTTTGGTTTCTTTATGTAAATTGGAAACAGCAATACGAGCAGCTAACACA 5670 Query 64068 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64127 || |||||||||||| | ||||| || || || ||||||| || ||| | |||||| Sbjct 5669 GCGTAATCCGGATGTCGAGTAGTCATAGAAGCAGCGGTTTCGGCGGCTAGATTATCCAAT 5610 Query 64128 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64179 || | ||||||||| ||| | ||| ||| || || ||||| || |||| Sbjct 5609 TCCATCGTTGTTACACCAGGAAATAAACCTCTGATTACTTTCATTGCGATTT 5558 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62969 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 |||||||| || | | ||||| | || || || || | |||||||| || ||||| Sbjct 7116 TACCTCATCAGGAGCACTATATTCGACGATTTCGGTACACAAATTACTACTTTTAATAGT 7057 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 |||||||||||| ||||| ||| | || || ||||| ||||| | ||| | || || Sbjct 7056 TCCTAAATTTTGATGATTGGATTTTCTATTGCATGCATCTTTATATAACATGTAAGGTGT 6997 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGC 63118 ||||||||||| || || || | ||| || Sbjct 6996 CCCAGTTTCAATTTGCGAGTCCAAAATTGC 6967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629344433782560