Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4462 152 5e-32 seq3858 111 1e-19 seq39349 105 6e-18 seq27620 91.5 1e-13 >seq4462 Length=45351 Score = 152 bits (168), Expect = 5e-32 Identities = 305/444 (69%), Gaps = 6/444 (1%) Strand=Plus/Plus Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGAC 37987 ||| ||||| | |||| ||| ||| ||| ||| | ||||| ||||||||| |||| Sbjct 16558 ATACAATTTATCGAAATT-TTCGCCCTAACAGTCGAACAATCCGGGACATTCGTTGGGAC 16616 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 |||||| | ||||| ||| | ||||| |||||| |||||| |||||| | ||||| Sbjct 16617 ACATTAAACTCCATTTTTCGTTATTTTCAACGCGTCTCATAAACTCATCAGGGATCCATA 16676 Query 38048 ATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT- 38105 || ||| |||||||| | | | | ||||||| || || || |||| ||||| Sbjct 16677 GCGC-GTAGAATAAATCCCTAGCGCGAGATTCTTCTTTACCAGAGTTTTTTCG-AAGCTC 16734 Query 38106 TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 || ||||| || ||||| | ||||| ||||| | |||| | | || || ||||| Sbjct 16735 TAAGAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTAAACTGCGAAAGCGCCGGGTCT 16794 Query 38166 TTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTAC 38225 ||| | ||||| |||| | |||||| ||||||||||||||| | | ||| || || Sbjct 16795 TTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATTATATACCCGAAGCATCGGCAC 16854 Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285 | |||||| ||| |||||| | || | || || | || ||| || | Sbjct 16855 GAGACCATTTGATACACCGTTTGTCCCAGCAATGTAGCTGTTTGTACCTCTGATGCAATG 16914 Query 38286 TATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATC 38345 ||| ||| || | |||||| || ||| || || | |||||| | ||| || | Sbjct 16915 TATATGCAAACCAACTCCACCAGCTGATTTAGAAATCATAGCGCAATTCGTTAGAGTGTG 16974 Query 38346 AAATATACCTTCTATACTGTCATC 38369 ||||||||||| |||||||| || Sbjct 16975 GAATATACCTTCGATACTGTCGTC 16998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 |||||| | || || ||||| |||||||| ||||| | || |||| ||||| || Sbjct 17112 GGAGTTGCAGCATTGAATAAGGTAGGAGAAGCATGGGTAAAATATTTCAACGACATTAAA 17171 Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529 ||||| ||||| || | ||| ||||| ||||||||||||| | ||| || | ||| Sbjct 17172 TTATAAGTTTCAATCGCCGAATCAATATCTTCGCCGTGAATACCGACAGAAACTCGCATC 17231 Query 38530 AGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCT 38589 | ||| |||||||| | ||| | || || || ||| | || ||||||| | ||| Sbjct 17232 AACATGTGTTGTGGACGTTCGACAATACGATCGTTGATTTTTAATAAATACGATCTCTCT 17291 Query 38590 AATGT 38594 || || Sbjct 17292 AAGGT 17296 >seq3858 Length=10210 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||||||||| |||| ||| ||||| || || |||||| ||||| | | Sbjct 7922 ACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAAG 7863 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || || ||||| | ||| ||||||| ||||| || |||||||| || || | || | Sbjct 7862 GATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAAC 7803 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 ||| || | || | | || ||| | | ||| | || |||||||||||||| Sbjct 7802 GAATTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCATAAATTA 7743 Query 37318 GTTGGGTT--CTTTAACCACATATCATATTGTAGAAT 37352 ||||| || | || ||||||||| || |||| ||| Sbjct 7742 GTTGGCTTGACATT--CCACATATCGTACTGTAAAAT 7708 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 |||| ||||| |||| || |||||| || | |||| ||| | |||||| || || Sbjct 6531 TTATTTCCTCCTTGATCAACATATCTCGCTACGCTATTGAATACACGTAACATTGGCACG 6472 Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTT 38286 |||||||||||| || || |||| | |||||| || |||||| |||||| | Sbjct 6471 ATACCATTAGATACTCCATTGGTACCAGTTATATAGCTATTGGTAGCTCTAATATTATGT 6412 Query 38287 ATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAA-CGTATC 38345 || || |||| || || || ||| || |||| ||| || ||| ||| |||| Sbjct 6411 ATGTGTAAGCCTACGCCTCCGGCGGATTTAGAAATTAGAGCACA-CGTTGTAAGGGTATT 6353 Query 38346 AAATATACCTTCTATACTGTCATC 38369 || |||||||| |||||||| || Sbjct 6352 GAAAATACCTTCGATACTGTCTTC 6329 >seq39349 Length=17693 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 ||||||||||| ||||| ||| ||| || || | || ||||| | || | ||||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||||||||| ||||| ||||||||||| || || || ||||| ||||| | Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 11772 CTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAG 11828 | | | ||| |||||| | | | | || | | ||||||| || ||||| || | Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| |||| || || ||| ||||| || || ||||||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATA 11441 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| | | ||| || || || || ||||| ||||| |||||||| | |||||| || | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||||||| || || ||| ||| || || | || || || |||| | ||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | || || ||||| |||||||| ||| | |||||||||||||| | |||| || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 12070 AAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT-AAATC 12114 || | | |||| || | | ||| |||||||| ||| ||||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATC-TCTGAAATC 11122 >seq27620 Length=20860 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956 || || || ||||| ||||| || ||||| || ||||| | |||||| || | |||||| Sbjct 17969 ACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGTGATTTGA 17910 Query 11957 AATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAA 12016 ||||| || || ||| || |||| | || || || | | || | || ||||| Sbjct 17909 AATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTCGACTAAA 17850 Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 || ||||| |||||||||||| | ||||||||||||| | ||| || || | | Sbjct 17849 TTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAATGAATTTT 17790 Query 12077 TTTTCGTC 12084 ||||| || Sbjct 17789 TTTTCTTC 17782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468172809030880