Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq39349 156 6e-33 seq4462 138 1e-27 seq27620 127 3e-24 seq3858 116 5e-21 >seq39349 Length=17693 Score = 156 bits (172), Expect = 6e-33 Identities = 169/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 ||||||||| ||||||||||| || || || || ||||||||||| | |||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||| | |||||| ||||||||||||||| ||||| || || ||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 36302 ATAAGTCTCTCTCCATAA--CCGGCACTG-TCATGTATCCACTTTTGAGCCCAATCGGCC 36358 || | |||||||||| || | | ||| || |||||| || ||||| || || Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 36359 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 36400 || |||| ||||||||||| || || || |||||||| ||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 140 bits (154), Expect = 4e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | ||| || |||||||| | ||| ||||| || ||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 |||||||| ||||| ||| |||| || |||| || || || ||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597 | || |||||||| || || |||||| |||||||||||| || || |||||| || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642 || | | |||| | ||| | ||||| | |||||| ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 |||||||| || ||||| || ||||| || ||||| | ||| | |||||||| || | Sbjct 11927 AATCTATCAGCCACAAACTCAATATACGTCTTCATTAATTCGCTGTTCATTCCAATCATC 11868 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 || || || || | || | |||||||||||||||| || || || ||||| Sbjct 11867 GATACAGGCAGGGCATCGGTCAAAAATTCTTGTTCAATAATAACGGCATCACGAATAATT 11808 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 || | | ||| |||| || | | |||||||| ||||||||||| || ||| Sbjct 11807 TCGATGATTTCTTCAACACTAGGCTTTTGAACCAAATGTTTGAACATCAAACAAGCAAAA 11748 Query 36167 TCGCAGTGTAGACCCT 36182 ||| ||||| ||||| Sbjct 11747 TCGGTGTGTAAACCCT 11732 >seq4462 Length=45351 Score = 138 bits (152), Expect = 1e-27 Identities = 232/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 65972 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 66031 ||||||| ||||| | || ||| || | | |||||| |||||||| | ||||| Sbjct 16558 ATACAATTTATCGAAATTTTCGCCCTAACAGTCGAACAATCCGGGACATTCGTTGGGACA 16617 Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 ||| || ||| | | ||| || | || ||| ||||||| |||||| ||||| || Sbjct 16618 CATTAAACTCCATTTTTCGTTATTTTCAACGCGTCTCATAAACTCATCAGGGATCCATAG 16677 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || |||||||| || | | | ||| || || || | || ||| ||| || | Sbjct 16678 CGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTTACCAGAGTTTTTTCGAAGCTCTAA 16737 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 ||| | | |||||| ||||||| ||||||||||| | || | | | || || | ||| Sbjct 16738 GAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTAAACTGCGAAAGCGCCGGGTCTTTT 16797 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 ||| ||||| ||||| | ||||| || ||||||||||| || | | ||| || | | Sbjct 16798 GTTGCCTCCTTGATCGACATATCTGGCTGTGTTATTATATACCCGAAGCATCGGCACGAG 16857 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 |||||| ||| ||| || ||||| | || ||||| Sbjct 16858 ACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 ||||||||||||||||||| | || || | ||| | ||||| || || ||||| | Sbjct 15066 TCCATCCGTAAAAATGCATCGATGAAAGATTCGCGTAAGTTGGATCAGCCATGTGGATGT 15125 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | | |||| ||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 15126 TTAAACTTTGAGATTGGTCGATAAACGCTCCTCTGTCTGCAGCCATTTTTAGAATCGTCT 15185 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAA 65055 | ||| |||||||| | ||||| |||| Sbjct 15186 TCTGTTTTATTTCCCATACGGTTTTGTAAA 15215 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 65397 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 65456 || |||||| | ||||||| || || || || || || || || ||| |||||| Sbjct 15771 CCTTTACTGACTGGCGATCCTTTGTAAGTTTCATAAGGACCGAACTGCTGAGCAAGTTCA 15830 Query 65457 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 65516 ||||| ||||| || |||||||||||||||||||| || |||| ||||||| ||| Sbjct 15831 CAACTTGCCTCCAAAGCACCGTAATAAATGGTTTCAAAAATCTGTATATTTAGTAATTGG 15890 Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576 | || | || || ||||| | | | ||||| ||| ||||||||||||| | Sbjct 15891 GATTGCTCACTCTCGAATGGCAGCCTCATCATGATAAATAAGTCGGCTAATCCTTGAATA 15950 Query 65577 CCAATACCGATAGGTCTATGTCTCTTATTAGA 65608 || || || || || ||||| ||| ||| || Sbjct 15951 CCTATTCCAATCGGCCTATGCCTCAGATTCGA 15982 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA--GAAAGTAGA 66512 |||| | ||||| ||||||||||||||||| || ||||| || ||||| || | || | Sbjct 17114 AGTTGCAGCATTGAATAAGGTAGGAGAAGCATGGGTAAA--ATATTTCAACGACATTAAA 17171 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 66572 || || || ||||| || || || ||||| ||||| || || | || ||||| Sbjct 17172 TTATAAGTTTCAATCGCCGAATCAATATCTTCGCCGTGAATACCGACAGAAACTCGCATC 17231 Query 66573 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 66632 |||||||| || || | ||| || || | ||| ||||| || || || ||| | || Sbjct 17232 AACATGTGTTGTGGACGTTCGACAATACGATCGTTGATTTTTAATAAATACGATCTCTCT 17291 Query 66633 AAAGT 66637 || || Sbjct 17292 AAGGT 17296 >seq27620 Length=20860 Score = 127 bits (140), Expect = 3e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||| ||||| || || || ||||| | || ||||| || ||||| | ||||| |||| Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 |||||||||||||| || |||| || || | ||| || |||||| | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597 ||||||||||||| || || || ||| || |||||||| || || || ||| || Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642 || | |||||| | ||| | ||||| | |||||| ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 125 bits (138), Expect = 9e-24 Identities = 145/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || ||||| ||||||||||| | |||||||||||| ||||| | ||||| ||| Sbjct 18251 AAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATATCGCAGCAAAGCTTCCG 18192 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 36327 ||||||||||| ||||| || || ||||| ||||| | | || || || || || Sbjct 18191 GAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTTCAGCAAAAGTAGCGCTT 18132 Query 36328 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 ||| |||||| || ||||| || || ||||| ||||||||||||||||| || Sbjct 18131 TGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTACACAAGGCATTGTTTCA 18072 Query 36386 ATAGCATTAAAGAGA 36400 || ||||| || ||| Sbjct 18071 ATGGCATTGAACAGA 18057 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||||||||| || |||||||| ||||| || ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | || || | ||| | || | |||||||||||| || || ||||| ||||| Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165 | | | ||| |||||||| | | ||||||||||||||||||||||| || Sbjct 18428 TTCGGTAATTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGCAAA 18369 Query 36166 ATCGCAGTGTAGACCCT 36182 |||| |||| ||||| Sbjct 18368 ATCGGTATGTAAACCCT 18352 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 35853 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTT 35912 |||| ||||| |||| | |||||| || || | ||| ||||| ||||| |||||||| | Sbjct 18751 ACATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCAT 18692 Query 35913 CTAATGATATATTTTCCATGAAATCGAATGGATT 35946 || || ||||||||||| ||||| |||||||| Sbjct 18691 TCAAAGAAATATTTTCCATAAAATCAAATGGATT 18658 >seq3858 Length=10210 Score = 116 bits (128), Expect = 5e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 66468 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 66527 || || ||||| || ||||| ||||| || |||| || | | || ||||| || || Sbjct 6204 AACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTATACGTATCGATC 6145 Query 66528 GCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 66586 |||| ||| |||||| || | |||||||| || ||||| ||||| ||||||||||| || Sbjct 6144 GCTGCGTCGATATCCTCACCG-TGAATTCCCACAGCGACTCGCATCAACATGTGCTGTGG 6086 Query 66587 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 |||||| || | ||| ||| |||||||| || || || ||||| ||||| Sbjct 6085 TCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGACTTTTCTAAAGT 6035 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 || || | |||||| |||||||| |||| ||| || || || || | ||| |||| | Sbjct 5729 CTGAACATTTTTTTGGTTTCTTTATGTAAATTGGAAACAGCAATACGAGCAGCTAACACA 5670 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 || |||||||||||| | ||||| || || || ||||||| || ||| | |||||| Sbjct 5669 GCGTAATCCGGATGTCGAGTAGTCATAGAAGCAGCGGTTTCGGCGGCTAGATTATCCAAT 5610 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 || | ||||||||| ||| | ||| ||| ||| || ||||| || |||| Sbjct 5609 TCCATCGTTGTTACACCAGGAAATAAACCTCTGATTACTTTCATTGCGATTT 5558 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| |||||||||||||| || |||| | || || || || ||||| ||||| | Sbjct 7923 TACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAA 7864 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || || |||||||| |||||||||||||| || || || |||||||| || | | ||| Sbjct 7863 GGATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAA 7804 Query 65300 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 65353 ||| || | ||||||| | | ||||| ||||| | | |||||| ||| Sbjct 7803 CGAATTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCA 7750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657678331229680