Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq39349 150 3e-31 seq4462 134 2e-26 seq27620 129 8e-25 seq3858 120 4e-22 >seq39349 Length=17693 Score = 150 bits (166), Expect = 3e-31 Identities = 168/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 ||||||||| |||| |||||| || || || || ||||||||||| | |||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | |||||| ||||||||||| || ||||| || || ||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 50104 ACAAGTCTCTCTCCATAACTGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGGCC 50160 | | |||||||||| || | ||| ||| || |||||| || ||||| || || Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 || |||| ||||||||||| ||||| || |||||||| ||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 145 bits (160), Expect = 1e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | |||||| || ||||| | ||| ||||| || ||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || ||||| ||||| ||| |||| || |||| || ||||| ||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | || |||||||| || || |||||| |||||||||||| || || |||||| || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 || | | |||| | |||| | ||||| | |||||| ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 >seq4462 Length=45351 Score = 134 bits (148), Expect = 2e-26 Identities = 219/314 (70%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 79874 CCCAAACA-TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCA 79932 ||| |||| ||| ||||| |||||||||| |||||||| || ||| | | | | | Sbjct 16580 CCCTAACAGTCGAACAATCCGGGACATTCGTTGGGACACATTAAACTCCATTTTTCGTTA 16639 Query 79933 TCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 79992 | | || ||| ||||||| |||||| ||||| || || |||| ||| || | Sbjct 16640 TTTTCAACGCGTCTCATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCG 16699 Query 79993 CTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 80052 | | || || || || | || ||| ||| || | ||| | | |||||| |||||| Sbjct 16700 CGAGATTCTTCTTTACCAGAGTTTTTTCGAAGCTCTAAGAAATCAAAAATATCGGAATGC 16759 Query 80053 CACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTAT 80112 || ||||||||||| | || | | | || |||| |||||| ||||| ||||| | ||| Sbjct 16760 CAAGGTTCCAAGTAAACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACATAT 16819 Query 80113 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 80172 || || ||||||||||| || | | ||| || | | |||||| ||| ||| || ||| Sbjct 16820 CTGGCTGTGTTATTATATACCCGAAGCATCGGCACGAGACCATTTGATACACCGTTTGTC 16879 Query 80173 CCGGAGATATAGCT 80186 || | || ||||| Sbjct 16880 CCAGCAATGTAGCT 16893 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||||||||| |||||||| | || || | ||| | ||||| || || ||||| | Sbjct 15066 TCCATCCGTAAAAATGCATCGATGAAAGATTCGCGTAAGTTGGATCAGCCATGTGGATGT 15125 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | | |||| ||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 15126 TTAAACTTTGAGATTGGTCGATAAACGCTCCTCTGTCTGCAGCCATTTTTAGAATCGTCT 15185 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAA 78934 | ||| |||||||| | ||||| |||| Sbjct 15186 TCTGTTTTATTTCCCATACGGTTTTGTAAA 15215 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 |||||| |||| ||||||||||| || || | || | ||||||||| ||||| || Sbjct 15786 GATCCTTTGTAAGTTTCATAAGGACCGAACTGCTGAGCAAGTTCACAACTTGCCTCCAAA 15845 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || ||||||||||||||||| ||||||| |||| || ||| | || || || Sbjct 15846 GCACCGTAATAAATGGTTTCAAAAATCTGTATATTTAGTAATTGGGATTGCTCACTCTCG 15905 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 ||||| | | | ||||| ||| ||||||||||||| ||| || || || || Sbjct 15906 AATGGCAGCCTCATCATGATAAATAAGTCGGCTAATCCTTGAATACCTATTCCAATCGGC 15965 Query 79471 CTATGTCTCTTATTAGA 79487 ||||| ||| ||| || Sbjct 15966 CTATGCCTCAGATTCGA 15982 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA--GACAGTAGA 80391 |||| | ||||| ||||||||||||||||| || ||||| || ||||| |||| || | Sbjct 17114 AGTTGCAGCATTGAATAAGGTAGGAGAAGCATGGGTAAA--ATATTTCAACGACATTAAA 17171 Query 80392 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATT 80451 || || || ||||| || || || ||||| ||||| || || | || ||||| Sbjct 17172 TTATAAGTTTCAATCGCCGAATCAATATCTTCGCCGTGAATACCGACAGAAACTCGCATC 17231 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 |||||||| || || | ||| || || | || ||||| || || || ||| | || Sbjct 17232 AACATGTGTTGTGGACGTTCGACAATACGATCGTTGATTTTTAATAAATACGATCTCTCT 17291 Query 80512 AAAGT 80516 || || Sbjct 17292 AAGGT 17296 >seq27620 Length=20860 Score = 129 bits (142), Expect = 8e-25 Identities = 162/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 |||||||| || ||||| || || || ||||| ||||||||||| | ||||||| Sbjct 18278 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTA 18219 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || |||||||| || ||||| || || ||||| ||| Sbjct 18218 AGCCAGAATATCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACGCA 18159 Query 50104 ACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 50160 | | | || || || | ||||| ||| |||||| || ||||| || || Sbjct 18158 ATGACCCGTTCAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCGCT 18099 Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 ||||| |||||||||||||| ||||| |||||||| || ||| Sbjct 18098 TTCTTCTTTACACAAGGCATTGTTTCAATGGCATTGAACAGA 18057 Score = 127 bits (140), Expect = 3e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 ||| ||||| || || || ||||| | || ||||| || ||||| | ||||| |||| Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || ||||||||||| || |||| || || | ||| || |||||| | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 ||||||||||||| || || || ||| || |||||||| || || || ||| || Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 || | |||||| | |||| | ||||| | |||||| ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 100 bits (110), Expect = 4e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||||||||| || |||||||| ||||| || ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | || || | ||| | || | |||||||||||| || || || || ||||| Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 49908 AGATCTAACGGTTTCTT---CACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 49964 ||| |||||| |||||||| || | ||||||||||||||||||||||| Sbjct 18428 TTCGGTAA---TTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGC 18372 Query 49965 GAAATCGCAGTGCAGACCCT 49984 |||||| || | ||||| Sbjct 18371 AAAATCGGTATGTAAACCCT 18352 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 49655 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTT 49714 |||| ||||| |||| | |||||| || || | ||| ||||| ||||| ||||| || | Sbjct 18751 ACATTACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCAT 18692 Query 49715 CCAATGATATATTTTCCATGAAATCAAACGGATT 49748 ||| || ||||||||||| |||||||| ||||| Sbjct 18691 TCAAAGAAATATTTTCCATAAAATCAAATGGATT 18658 >seq3858 Length=10210 Score = 120 bits (132), Expect = 4e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| |||||||||||||| || |||| | || || || || ||||| ||||| | Sbjct 7923 TACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAA 7864 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||| |||||||| |||||||||||||| || || || |||||||| || | | ||| Sbjct 7863 GGATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGCAAGAAGTAA 7804 Query 79179 ACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATC 79238 ||| || | ||||||| | | ||||| ||||| | | |||||||||| | || Sbjct 7803 CGAATTCCTTACACCGTATTGTTTTATTTTTTCTTTCAACGCAGCCCAATCCCATAAATT 7744 Query 79239 AGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 || || |||||||| | ||| || |||| ||| Sbjct 7743 AGTTGGCTTGACATTCCACATATCGTACTGTAAAAT 7708 Score = 107 bits (118), Expect = 3e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 80347 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 80406 || || ||||| || ||||| ||||| || |||| || | | || ||||| || || Sbjct 6204 AACAAAGTAGGCGAGGCGTGAGTAAAATATCTTTCCGATAACAAGTTATACGTATCGATC 6145 Query 80407 GCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGG 80465 |||| || |||||| || | |||||||| || ||||| ||||| ||||||||||| || Sbjct 6144 GCTGCGTCGATATCCTCACCG-TGAATTCCCACAGCGACTCGCATCAACATGTGCTGTGG 6086 Query 80466 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 |||||| || | ||| || |||||||| || || || ||||| ||||| Sbjct 6085 TCTTTCGACTACCTTCCCGTTAATTTTCAATAAATACGACTTTTCTAAAGT 6035 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 79641 TACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGT 79700 |||||||| || | | ||||| | ||||| || || | ||||||| ||||| || Sbjct 7116 TACCTCATCAGGAGCACTATATTCGACGATTTCGGTACACAAATTACTACTTTTAATAGT 7057 Query 79701 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGT 79760 |||||||||||| ||||| ||| | || || ||||| ||||| | ||| | || || Sbjct 7056 TCCTAAATTTTGATGATTGGATTTTCTATTGCATGCATCTTTATATAACATGTAAGGTGT 6997 Query 79761 ACCAGTTTCAATCTGAGATTCTATAATCGC 79790 ||||||||||| || || || | ||| || Sbjct 6996 CCCAGTTTCAATTTGCGAGTCCAAAATTGC 6967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717729182607280