Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq39349 116 4e-21 seq27620 104 2e-17 >seq39349 Length=17693 Score = 116 bits (128), Expect = 4e-21 Identities = 160/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 || |||||| || | |||||| ||||| || | || ||||| | || | ||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAA--GTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| || ||||| || |||||||| || || || || |||||||||| Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | || | || |||||||| | || || | | || ||||||| || ||||| || | Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| |||| | | || ||| |||||||| |||||||||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATA 11441 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || || || ||||| | || || ||||| || || |||| ||||| || | ||| ||| Sbjct 11339 ATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGTTATTTGA 11280 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261 || || ||||| |||| ||||| | ||| || || | |||| | |||| |||| Sbjct 11279 AACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTCGACCAAG 11220 Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 |||||||| || ||||| ||| |||||||||||||| || | | | ||| || | | Sbjct 11219 TTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAATGAATTTT 11160 Query 14322 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCT 14361 ||||| || ||||||| |||||| ||||||| Sbjct 11159 CTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATCCT 11120 >seq27620 Length=20860 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 || ||| || || || | |||||| ||||| || || |||| ||||| || | || || Sbjct 17970 AACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGTGATTTG 17911 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAA 14260 ||| || |||||| |||| ||||| | ||| ||||| | || | ||| | || Sbjct 17910 AAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTCGACTAA 17851 Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14320 ||||||||| || ||||||||| || ||||||||||| || | || | ||| || | Sbjct 17850 ATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAATGAATTT 17791 Query 14321 TTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 || ||||| || ||||||| |||||| Sbjct 17790 TTTTTCTTCGGGTTTCAGTTTTTGCCAATC 17761 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 13908 ATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965 || ||||| || ||||| || | ||| ||||| | |||| ||||| | ||| |||| Sbjct 18266 ATCAGTTCATTACTGAAA--GTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATA 18209 Query 13966 TTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 | |||||||| ||||||||||| || || || || ||||||||||| || | |||| Sbjct 18208 TCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTT 18149 Query 14026 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 | |||| | || ||| | | ||||||||| ||||| || | ||| || || | Sbjct 18148 CAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTA 18089 Query 14086 TAAAATCCATTGTTTCAATAGCATTAAA 14113 | || |||||||||||| ||||| || Sbjct 18088 CACAAGGCATTGTTTCAATGGCATTGAA 18061 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 13512 TTCAATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAA-AT 13570 ||||| || ||||||||||| | ||||| || |||| ||| | | | ||| || Sbjct 18806 TTCAAGAAGAACTAAAAATCGGCGTCTAACTTGAATTCATTTTCGCCACT-TGGGAACAT 18748 Query 13571 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAG 13630 || || |||| | ||||| | ||||||||| || ||||| || |||||||| | || Sbjct 18747 TACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCATTCAA 18688 Query 13631 TGATATATTTTCCATAAAATCAAATGGATTT 13661 || ||||||||||||||||||||||||||| Sbjct 18687 AGAAATATTTTCCATAAAATCAAATGGATTT 18657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479367592346800