Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq39349 113 4e-20 seq27620 104 2e-17 >seq39349 Length=17693 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || || || ||||| | || || ||||| || || |||| ||||| || | ||| ||| Sbjct 11339 ATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGTTATTTGA 11280 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 || || |||||| |||| ||||| | ||| ||||| | |||| | ||| ||||| Sbjct 11279 AACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTCGACCAAG 11220 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 |||||||| |||||||| ||| |||||||||||||| || | | | ||| || | | Sbjct 11219 TTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAATGAATTTT 11160 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 ||||| || ||||||| |||||| ||||||| Sbjct 11159 CTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATCCT 11120 Score = 107 bits (118), Expect = 2e-18 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 || |||||| || | |||||| ||||| || | || ||||| | || | ||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAA--GTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| || || || ||| |||||||| || || || || |||||||||| Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | || | || |||||||| | || || | | | ||||||| || ||||| || | Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 |||| |||| | | || ||| ||||| |||||||| |||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATA 11441 >seq27620 Length=20860 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 13696 ATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13753 || ||||| || ||||| || | ||| ||||| | |||| ||||| | ||| |||| Sbjct 18266 ATCAGTTCATTACTGAAA--GTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATA 18209 Query 13754 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTT 13813 | ||||| || |||||||||||| || || || || ||||||||||| || | |||| Sbjct 18208 TCGCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTT 18149 Query 13814 CTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 | |||| | || ||| | | ||||||||| ||||| || | ||| || || | Sbjct 18148 CAGCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTA 18089 Query 13874 TAAAATCCATTGTTTCGATTGCATTGAA 13901 | || ||||||||| || |||||||| Sbjct 18088 CACAAGGCATTGTTTCAATGGCATTGAA 18061 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 || ||| || || || | |||||| ||||| || || |||| |||||||| | || || Sbjct 17970 AACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGTGATTTG 17911 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 ||| || ||||| |||| ||||||| ||| || || | || | || | || Sbjct 17910 AAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTCGACTAA 17851 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 |||||||| |||||||||||| || ||||||||||| || | || | ||| || | Sbjct 17850 ATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAATGAATTT 17791 Query 14109 TTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138 || ||||| || ||||||| |||||| Sbjct 17790 TTTTTCTTCGGGTTTCAGTTTTTGCCAATC 17761 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 13300 TTTAATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAA-AT 13358 || || || ||||||||||| | ||||| || |||| ||| | | | ||| || Sbjct 18806 TTCAAGAAGAACTAAAAATCGGCGTCTAACTTGAATTCATTTTCGCCACT-TGGGAACAT 18748 Query 13359 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAG 13418 || || |||| | ||||| | ||||||||| || || || || |||||||| | || Sbjct 18747 TACTCCACTTTTCTTGTATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCATTCAA 18688 Query 13419 TGATATATTTTCCATAAAATCGAATGGATTT 13449 || ||||||||||||||||| ||||||||| Sbjct 18687 AGAAATATTTTCCATAAAATCAAATGGATTT 18657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478229248199280