Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq48073 114 1e-20 seq37708 102 6e-17 >seq48073 Length=7537 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||| || ||||| | |||| || || || | |||||| ||| | Sbjct 6055 CCACCACGGAGACGTAAAACTAAATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTC 5996 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| || ||||||||||| || ||||| ||||| || || |||| || Sbjct 5995 AAGGTACGTCCGTCTTCTAATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGG 5936 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || || | |||| || | | | || || | || || Sbjct 5935 ATACCTTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACC 5876 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||| ||||| |||||||| | |||||| || |||||||||||| Sbjct 5875 TCCAGCGTAATAGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 5828 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | ||| |||||||||| || || ||||| | ||| |||||| Sbjct 6283 CCACCGCGGAGACGTAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTG 6224 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||| ||||| ||||| || ||||||| ||| || |||| || Sbjct 6223 AGAGTACGGCCGTCTTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 6164 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| ||||||| | | | |||||| | || || Sbjct 6163 ATACCTTCTTTATCTTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACT 6104 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| || ||||| |||||||||||||| Sbjct 6103 TCCAAGGTGATGGTTTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||| |||||||| | || ||| ||||| | ||||||||| | Sbjct 6967 CCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTC 6908 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||| ||||| || ||||| ||||||||||| || || | ||| Sbjct 6907 AGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGG 6848 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| || | || || | | | || ||| | || || Sbjct 6847 ATTCCTTCTTTATC-CTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTAC 6789 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||| || || |||||||| | |||||| || |||||||||||| Sbjct 6788 CTCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| ||||| | ||||||||| ||| || || |||| ||||| ||||| ||||| || Sbjct 6476 CTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAA 6417 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 ||| || ||||| || |||| || | |||||||| || |||| | ||||||| Sbjct 6416 AATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATC-CTGAATTTTAGCTTTGACGT 6358 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| || || | || || || | || || ||||| ||||||| ||||| | Sbjct 6357 TTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAA 6298 Query 43097 CAAAAATTTGCAT 43109 ||||||||||||| Sbjct 6297 CAAAAATTTGCAT 6285 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| | || | ||||||||| | || || || || | || |||||| | Sbjct 6739 CCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTC 6680 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| ||||||||||| ||||| || ||||||| || || |||| || Sbjct 6679 AAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGG 6620 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || || |||| || | ||| || ||| | || || Sbjct 6619 ATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAACC 6560 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||| || ||||| || || | |||||| ||||||||||||||| Sbjct 6559 TCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| | || | ||||||||| | || || || || | || |||||| | Sbjct 5827 CCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTC 5768 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| |||||||| || ||||| || ||||||| ||||| |||| || Sbjct 5767 AAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 5708 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || |||| || | | | || ||| | ||| || Sbjct 5707 ATGCCTTCCTTGTC-CTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTAC 5649 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || ||||| ||||||| || || || ||||||||||| Sbjct 5648 TTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 >seq37708 Length=8338 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || || ||||| | ||| ||||||||||| || | | | || || Sbjct 4661 ACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCTTCG 4720 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||||||||| ||||| || ||||| |||| || | |||||||| || | Sbjct 4721 AGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTGG 4780 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | || || | | | ||||||| || |||||| || | || || ||||| Sbjct 4781 ATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACTTCGAGGGTAATCGTTTTG 4840 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| | ||||| || ||||||||||| Sbjct 4841 CCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || | ||||||||| | ||| ||| ||||| | ||||||||||| Sbjct 4187 CCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAG 4246 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||||||||| ||||| ||||| | || || || |||| || Sbjct 4247 AGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 4306 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || ||||| || ||| | | |||| || | | | ||||||| || ||| | Sbjct 4307 ATTCCCTCTTTATC-TTGAATTTTAGCCTTT-ACATTTTCGATGGTGTCGCTAGGCTCAA 4364 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| ||||| | |||||||| || |||||||| Sbjct 4365 CTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381090249389916