Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq39349 156 6e-33 seq4462 134 2e-26 seq27620 125 1e-23 seq3858 84.2 3e-11 >seq39349 Length=17693 Score = 156 bits (172), Expect = 6e-33 Identities = 169/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 || |||||| ||||||||||| || || || || ||||||||||| | |||||| Sbjct 11660 TCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTTTA 11601 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||||| |||||| |||||||||||| || ||||| || || ||||| ||| Sbjct 11600 AGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACGCA 11541 Query 42209 ATAAGTCTCTCTCCATAA--CCGGCACTG-TCATGTATCCACTTTTGAGCCCAATCGGCC 42265 || | |||||||||| || | | ||| || |||||| || ||||| || || Sbjct 11540 ATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTGCT 11481 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || |||| ||||||||||| ||||| || |||||||| ||| Sbjct 11480 TTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGA 11439 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||| || || ||||| | ||| ||||| |||||||| | |||||||| | Sbjct 11346 ATCTTTGATATAAGTGTCAATCAACAAACTGTACATCTCTGAATGTACATTTTCAATTGT 11287 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||| ||||| ||| ||||||| |||| | || || ||| |||| ||||| Sbjct 11286 TATTTGAAACCCGTAAAAAAATCTGGCTTCGGGGATTTGCACCTCTTGGAAAAAACGTTC 11227 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | || ||||| || || || |||||| |||||||||||| || || |||||| || Sbjct 11226 GACCAAGTTTTCATTGACAATACCGTCAGAGGCTGCAAAAAATGCTAAGACATGTGAAAT 11167 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 || | | |||| || ||| | | ||| | |||||| ||| ||| Sbjct 11166 GAATTTTCTTTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 11122 >seq4462 Length=45351 Score = 134 bits (148), Expect = 2e-26 Identities = 209/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 ||||| |||||||| || |||||||| || ||| | | | | || | || ||| || Sbjct 16595 AATCCGGGACATTCGTTGGGACACATTAAACTCCATTTTTCGTTATTTTCAACGCGTCTC 16654 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 72090 ||||| |||||| ||||| || || |||| ||| || | | | || || || Sbjct 16655 ATAAACTCATCAGGGATCCATAGCGCGTAGAATAAATCCCTAGCGCGAGATTCTTCTTTA 16714 Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150 || | || ||| ||| || | ||| | | |||||| |||||||| ||||||||||| Sbjct 16715 CCAGAGTTTTTTCGAAGCTCTAAGAAATCAAAAATATCGGAATGCCAAGGTTCCAAGTAA 16774 Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210 | || | | | || || | |||||| ||||| ||||| | ||||| || ||||||||| Sbjct 16775 ACTGCGAAAGCGCCGGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATTA 16834 Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 || || | | ||| || | | |||||| ||| |||| || ||||| | || ||||| Sbjct 16835 TATACCCGAAGCATCGGCACGAGACCATTTGATACACCGTTTGTCCCAGCAATGTAGCT 16893 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||||||||||||||||| | || || | || | ||||| || ||||| || | Sbjct 15066 TCCATCCGTAAAAATGCATCGATGAAAGATTCGCGTAAGTTGGATCAGCCATGTGGATGT 15125 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||| ||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 15126 TTAAACTTTGAGATTGGTCGATAAACGCTCCTCTGTCTGCAGCCATTTTTAGAATCGTCT 15185 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAA 71017 | ||| |||||||| | ||||| |||| Sbjct 15186 TCTGTTTTATTTCCCATACGGTTTTGTAAA 15215 >seq27620 Length=20860 Score = 125 bits (138), Expect = 1e-23 Identities = 145/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || ||||| ||||||||||| | |||||||||||| ||||| | ||||| ||| Sbjct 18251 AAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATATCGCAGCAAAGCTTCCG 18192 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 |||||||| || ||||| || || ||||| ||||| | | || || || || || Sbjct 18191 GAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTTCAGCAAAAGTAGCGCTT 18132 Query 42235 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 ||| |||||| || ||||| || || ||||| |||||||||||||| ||||| Sbjct 18131 TGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTACACAAGGCATTGTTTCA 18072 Query 42293 ATGGCATTAAAGAGA 42307 |||||||| || ||| Sbjct 18071 ATGGCATTGAACAGA 18057 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||| ||||| || || || ||||| | || ||||| || ||||| | ||||| |||| Sbjct 17976 ATCCTTAACGTAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGT 17917 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||||||||| || ||||||| || | || || |||||| | | || || || Sbjct 17916 GATTTGAAATCCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTC 17857 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 |||||||||| || || || || ||| || |||||||| || || || ||| || Sbjct 17856 GACTAAATTTTCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAAT 17797 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 || | |||||| || ||| | | ||| | |||||| ||| ||| Sbjct 17796 GAATTTTTTTTCTTCGGGTTTCAGTTTTTGCCAATCTCTGAGATC 17752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||||||||| || | ||||| ||||| || ||||| | ||| | ||||||||| || | Sbjct 18548 CAATCTATCGGCTACAAATTCAATATACGTCTTCATTAATTCGCTATTCATTCCAATCAT 18489 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | || || | ||| | || | |||||||||||| || || ||||| ||||| Sbjct 18488 TGATACGGGTAAAGCATCGGTCAAAAATTCTTGTTCTATTTTAACAGCGTCACGAATAAT 18429 Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072 | | | ||| |||||||| | | ||||||||||||||||||||||| || Sbjct 18428 TTCGGTAATTTCTTCAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACATGCAAA 18369 Query 42073 ATCGCAGTGCAGACCCTCAT 42092 |||| || | ||||| || Sbjct 18368 ATCGGTATGTAAACCCTAAT 18349 >seq3858 Length=10210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| |||||||||||||| || |||| | || || || || ||||| ||||| | Sbjct 7923 TACCTGAAATTCTCCAGATAAAACTCGTCTGGTATACATGTTTGAAGTATAAGGTTCGAA 7864 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 71252 || || |||||||| |||||||||||||| || || || |||||||| || Sbjct 7863 GGATTCGTTATTTCCTAAAATTTGAGCAGTAGACGCTGTAGGCATAGGGGC 7813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670634989897520