Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4462 122 1e-22 seq39349 93.3 6e-14 >seq4462 Length=45351 Score = 122 bits (134), Expect = 1e-22 Identities = 232/339 (68%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||| || || || ||||| ||||| ||||| || | || || |||| ||| Sbjct 38501 GGTGATCTTGGTCCTGTTTACGGGTTCCAATGGAGACATTTTGGAGCCGAGTACAAAGAT 38560 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185 ||| | || || ||| | | || | |||||| | || | |||| ||||| | Sbjct 38561 ATGC-ACACTGATTATACAAACAAAGGCATCGATCAACTTCAAAACGTCATAGACACGAT 38619 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 || | ||||| ||||| || || | | ||| | |||||||| ||||| | Sbjct 38620 TAAAAATAATCCCGACGATAGAAGAATAATCCTATGCGCTTGGAATCCCATTGATTTACC 38679 Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATT 70305 ||||||| |||| ||||||||||| |||| ||||||||| | ||||| || | Sbjct 38680 TAAAATGGCCTTACCTCCGTGTCACTGCTTGGTGCAGTTTTACGCAGTTAATGGCGAACT 38739 Query 70306 GTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGC 70365 || || ||||||||| | |||||| ||||| || |||||||| || ||||| || Sbjct 38740 ATCGTGTCAAATGTATCAACGATCTGCCGATATGGGTCTTGGTGTACCTTTCAACATCGC 38799 Query 70366 AAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 || || ||| || | ||| | ||||||||||| |||| Sbjct 38800 CAGTTACTCTCTGCTCACGTATATGATTGCTCATGTTAC 38838 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| ||| | || |||||| | || || ||||||||||||||||| | || Sbjct 16809 CAAGGAGGCAACAAAAGACCCGGCGCTTTCGCAGTTTACTTGGAACCTTGGCATTCCGAT 16750 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 ||||||| || | ||| | || ||||||||||| ||||| | || || ||||| Sbjct 16749 ATTTTTGATTTCTTAGAGCTTCGAAAAAACTCTGGTAAAGAAGAATCTCGCGCTAGGGAT 16690 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 || || || || || ||| | || ||| ||| |||| ||||| | | | | Sbjct 16689 TTATTCTACGCGCTATGGATCCCTGATGAGTTTATGAGACGCGTTGAAAATAACGAAAAA 16630 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||||| ||||||| ||| || | ||||| ||| ||| || | ||||||| | || Sbjct 16629 TGGAGTTTAATGTGTCCCAACGAATGTCCCGGATTGTTCGACTGTTAGGGCGAAAATTTC 16570 Query 97116 GA 97117 || Sbjct 16569 GA 16568 >seq39349 Length=17693 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || || || || || |||||||| || ||||||||||| || |||||||| Sbjct 11542 GCGTTTGCTGCTGTCGAAGGGATTTTCTTTTCTGGAAGTTTTGCGGCTATATTTTGGCTT 11601 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 || || | || || ||||| || ||||| ||||||||| || |||||| ||||||| Sbjct 11602 AAAAAAAGGGGCCTAATGCCTGGTCTGACTTTCAGTAACGAATTAATATCTAGAGACGA 11660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740502460749520