Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq37708 134 1e-26 seq48073 102 7e-17 >seq37708 Length=8338 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||||||||||||||||||||||||||| ||||||| | ||| | | || Sbjct 3290 AATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAAAGCGTTCTACCATCT 3349 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || |||| || | ||||||||| || | || |||||||| Sbjct 3350 TCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGGATACCTTCTTTGTCT 3409 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| || || | ||| ||||||| |||||| ||||| ||| |||||| Sbjct 3410 TGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGGGTGATGGTT 3469 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||||| || || ||||| || || ||||| Sbjct 3470 TTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | || |||| |||||||| || || ||||||||||| || |||| Sbjct 3959 CCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAG 4018 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | |||| || || |||||||| || |||| | | ||||| || ||| Sbjct 4019 AGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGA 4078 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||| || |||||| || || | ||| || |||| ||||| | Sbjct 4079 ATTCCCTCTTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGACT 4138 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || |||||||| ||||| || ||||| || ||||||||||| Sbjct 4139 TCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | |||| ||||||||||| || ||||| ||||| ||||| | | Sbjct 4643 CCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGAC 4702 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || |||||||| || ||| | || | | || || || || Sbjct 4703 AAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGG 4762 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| ||||| || || | ||| ||| |||| |||||| | Sbjct 4763 ATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACT 4822 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||||| ||||| || || || ||||| || ||||||||||| Sbjct 4823 TCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || || ||||| || || || |||| | ||| | |||| || Sbjct 4889 ACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCG 4948 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || || | || || | |||||||| || | ||| ||||| || Sbjct 4949 AGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGG 5008 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| ||| || | ||| ||| |||| ||||| ||||| ||| ||||||||| Sbjct 5009 ATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTTA 5068 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || ||||| ||||| || |||||||| Sbjct 5069 CCAGTCAACGTTTTAACAAAGATCTGCATTTT 5100 >seq48073 Length=7537 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| | | || || | ||| | || ||||| |||||||| |||||||| Sbjct 6513 TTCCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGC 6454 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || ||| | |||| |||| |||||| || || |||| | | |||||| || | Sbjct 6453 TCAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTG 6394 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| ||||| || |||||| ||| || | | | ||||| || || Sbjct 6393 GAATGCCTTCTTTATCCTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTA 6334 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 6333 CTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || ||||| | ||||| || | |||||| || || ||||| || ||||| Sbjct 6741 TTCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGC 6682 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || ||| | |||| |||| ||||| || || | || | ||| ||||| || | Sbjct 6681 TCAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTG 6622 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| |||||| ||| || | | | |||||| || || Sbjct 6621 GGATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAA 6562 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | |||||||||||||| || |||||||| ||||||||||||||| Sbjct 6561 CCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || ||||| | ||||| || | |||||| || || ||||| || ||||| Sbjct 5829 TTCCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGC 5770 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || ||| | |||| |||| || || || || | || | ||| || || || | Sbjct 5769 TCAAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTG 5710 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| || ||||| ||| || ||| || | ||| |||||| ||||| Sbjct 5709 GGATGCCTTCCTTGTCCTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTA 5650 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||||||||||| ||||| || ||||| ||||||||||| Sbjct 5649 CTTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | | ||| |||| || | || ||||| |||||||| |||||||| | Sbjct 6967 CCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTC 6908 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || |||| |||| ||||||||| ||| | || | || |||||| || || Sbjct 6907 AGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGG 6848 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || |||||| || || | ||| ||||||| || || Sbjct 6847 ATTCCTTCTTTATCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACC 6788 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| || || || || |||||||| || |||||||||||| Sbjct 6787 TCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414269128274188