Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq48073 145 5e-30 seq37708 105 5e-18 seq15454 100 2e-16 >seq48073 Length=7537 Score = 145 bits (160), Expect = 5e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 43904 AATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGC 43963 || || | ||||||||||||||| ||||| ||||| ||||||||| | || || Sbjct 6730 AACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGG 6671 Query 43964 TCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCT 44023 | || |||||||||||||| || || ||||| | ||||||||| | || | ||||||| Sbjct 6670 CCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTGGGATACCTTCT 6611 Query 44024 TTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTA 44083 || ||| |||||| ||| || | ||| ||||| | ||| || || || | |||| Sbjct 6610 TTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAACCTCCAACGTA 6551 Query 44084 ATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||| || ||||| || ||||| |||||||| Sbjct 6550 ATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCAT 6513 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||||||||| || |||||| | || || | || ||||| |||||||| || || Sbjct 6476 CTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAA 6417 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || ||||| |||||||| | || | ||||||||||| |||||| |||||| | Sbjct 6416 AATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCCTGAATTTTAGCTTTGACGTT 6357 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | ||| || || || | ||||| |||||||||||||| || || || Sbjct 6356 TTCAATCGTATCAGACGGTTCTACTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAAC 6297 Query 44110 AAATATTTGCAT 44121 ||| |||||||| Sbjct 6296 AAAAATTTGCAT 6285 Score = 122 bits (134), Expect = 6e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 43887 ATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTAT 43946 |||| ||||||| | | | ||| |||||||| || || |||||||||||| || | Sbjct 6975 ATCAATAACCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGT 6916 Query 43947 AATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGT 44006 ||||| | | ||| | || ||||| ||||| || ||||| ||||| || ||||||| Sbjct 6915 AATCGCTCAGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGT 6856 Query 44007 CCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCG 44066 | | || | ||||||||||| |||||| || || | | | |||||| | || Sbjct 6855 CAGGCGGGATTCCTTCTTTATCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACG 6796 Query 44067 GCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || | |||||| || || ||||| ||||| || || || |||||||| Sbjct 6795 GTTCTACCTCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| || ||| |||||||||||||| || ||| | || ||| | || Sbjct 5584 AAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCGTCT 5525 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| |||||||| || || || ||||| |||||||| | || | ||||||||||||| Sbjct 5524 TCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTATCT 5465 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| |||||| | ||| || || | ||| || || || | || || || Sbjct 5464 TGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGGTC 5405 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | ||| || ||||| || ||||| Sbjct 5404 TTTCCAGTAAGAGTTTTAACAAAAATCTGCAT 5373 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 43904 AATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGC 43963 || || | ||||||||| ||||| ||||| ||||| ||||||||| | || || Sbjct 5818 AACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGG 5759 Query 43964 TCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCT 44023 | || |||||||| || || || || ||||| | ||| ||||| | || | ||||| Sbjct 5758 CCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCC 5699 Query 44024 TTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTA 44083 || || ||| || ||| || | | | ||||| | |||||| || || | |||| Sbjct 5698 TTGTCCTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTACTTCCAACGTA 5639 Query 44084 ATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||||||||| ||||| || || |||||||| Sbjct 5638 ATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || ||||| || ||| ||||| || ||||| || ||| | || ||| | || Sbjct 6041 TAAAACTAAATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTCAAGGTACGTCCGTC 5982 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || |||||||| || || || || || ||||||||||| | || | |||||||||||| Sbjct 5981 TTCTAATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATC 5922 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || | | | ||||||| || || || || | |||||| || Sbjct 5921 TTGAATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACCTCCAGCGTAATAGT 5862 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| ||||| || || || |||||||| Sbjct 5861 CTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 5829 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| || || ||||||||||||||||||||| | | ||| | || Sbjct 6269 TAAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTC 6210 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||| ||||| || || || ||||| | |||||||| | || | |||||||||||| Sbjct 6209 TTCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATC 6150 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | || || |||||| | | | || || | ||| ||||| || | || || || Sbjct 6149 TTGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGT 6090 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| | || || ||||| |||||||| Sbjct 6089 TTTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 >seq37708 Length=8338 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||||| | ||||||||||| || ||||||||| || || |||||| Sbjct 4186 ACCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGA 4245 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || ||||||||||| || || || || | ||||||||||| |||| Sbjct 4246 GAGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGG 4305 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| |||||| || || | | | || || ||||| || Sbjct 4306 AATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAAC 4365 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| ||||| ||||| || || ||||| || |||||||| Sbjct 4366 TTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||| | |||||||| || ||| || |||||||| ||||||||| Sbjct 3502 ACCACCTCTTAATCGGAGAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGA 3561 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | |||||| || || || || | ||||||||||| |||| Sbjct 3562 AAGGGTACGGCCATCTTCGAGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGG 3621 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| |||||| ||||| | | | || || ||||| || Sbjct 3622 AATTCCCTCTTTATCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTAC 3681 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||| || || || ||||| || || ||||| || |||||||| Sbjct 3682 TTCTAACGTGATGGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | | |||||||| | ||| |||||||| |||||||||||| Sbjct 4642 ACCACCTCTCAAACGGAGTACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGA 4701 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| || | ||||| || ||||| ||||| ||||| ||||| |||| Sbjct 4702 CAAGGTCCTTCCATCTTCGAGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGG 4761 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||||| || || | | | ||| || ||||| || Sbjct 4762 GATGCCTTCTTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGAC 4821 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| ||||| ||||| || || || || || |||||||| Sbjct 4822 TTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||||| || |||||||| | ||| ||||||||||||||||| || Sbjct 3958 ACCGCCTCTCAATCGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGA 4017 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || || | |||||| || || || || || ||||||||||| | || Sbjct 4018 GAGAGTCCTACCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGG 4077 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| |||||| ||||| | | | || || ||||| || Sbjct 4078 AATTCCCTCTTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGAC 4137 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| || || || || || || || |||||||| Sbjct 4138 TTCGAGTGTGATGGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| || | ||||| || || || |||||||| || ||||| || Sbjct 4870 ACCGCCTCTCAGTCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCG- 4928 Query 43954 TAATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGA 44011 || | || | || || | ||||||||| || || || | |||||||| || || Sbjct 4929 -AAAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGA 4987 Query 44012 GGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCC 44071 || | |||||||||||| ||||| |||||| | | | ||| || |||||| Sbjct 4988 GGGATGCCTTCTTTATCTTGGATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCT 5047 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| || || |||||||| || || || || ||||| || ||||| Sbjct 5048 ACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAACAAAGATCTGCAT 5097 >seq15454 Length=877 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||| |||||||| ||||| ||| | |||| |||||||| ||||| || || | Sbjct 224 CTTTCTGAATATTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 165 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 | || ||||||||||| |||| | |||||| |||||| |||||| |||||| | Sbjct 164 TTAAACGTTGCTGGTCGGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTT 105 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 | | ||||| | || || || |||| || || |||||||| || | || ||||| | Sbjct 104 CTATCGTATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCACGA 45 Query 44112 ATATTTGCAT 44121 | || ||||| Sbjct 44 AAATCTGCAT 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354517727847096