Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq48073 149 5e-31 seq37708 111 1e-19 >seq48073 Length=7537 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || |||||||| | |||||||||||| ||||||||||| || ||||| ||||||| Sbjct 6741 TTCCACCACGTAACCTGAGCACCAAATGTAGCGTAGATTCTTTCTGAATGTTATAATCGC 6682 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || |||| |||||||||||||| || || | || | || || || ||| | Sbjct 6681 TCAAAGTTCGGCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGCTGGTCGGGTG 6622 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| |||||| | ||| | |||| ||||| Sbjct 6621 GGATACCTTCTTTGTCTTGAATTTTGGCTTTCACATTTTCAATGGTATCGGACGGTTCAA 6562 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||||||||| || ||||| ||||| ||||||||||||||| Sbjct 6561 CCTCCAACGTAATGGTTTTACCAGTCAAAGTTTTTACAAAAATTTGCATT 6512 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| ||||| | | ||| || || || || || || |||||||| ||||||||||||| Sbjct 6513 TTCCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGC 6454 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || |||| |||||||| ||||| || || |||| | || ||| || ||| | Sbjct 6453 TCAAAGTTCGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTG 6394 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||| || |||||| ||| || | ||| | ||| ||||| Sbjct 6393 GAATGCCTTCTTTATCCTGAATTTTAGCTTTGACGTTTTCAATCGTATCAGACGGTTCTA 6334 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||||||||||| ||||| |||||||| |||||||||||||| Sbjct 6333 CTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || |||||||| | ||||||||| || ||||||||||| || ||||| ||||||| Sbjct 5829 TTCCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGC 5770 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || |||| ||||||||||| || || || | || | || ||||| ||| | Sbjct 5769 TCAAAGTTCGGCCGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTG 5710 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| ||| || ||| || | | | | |||| || || Sbjct 5709 GGATGCCTTCCTTGTCCTGAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTA 5650 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| Sbjct 5649 CTTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 113 bits (124), Expect = 4e-20 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 19972 TTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTT 20031 |||||| | ||||| || | | || |||||||| || || || |||||||| ||||| Sbjct 6977 TTATCAATAACCTCCACGAAGACGTAAAACCAAATGAAGGGTCGACTCTTTTTGAATGTT 6918 Query 20032 GTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTG 20091 |||||||| || ||| | |||||||| ||||| || ||| | || | | ||| || Sbjct 6917 GTAATCGCTCAGAGTACGACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTG 6858 Query 20092 ATC-GACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGC 20150 || | |||| | |||||||| || |||||| ||||| | | | || |||| Sbjct 6857 GTCAGGCGGG-ATTCCTTCTTTATCCTGAATTTTGGCCTTCACGTTTTCGATAGTATCGG 6799 Query 20151 CAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| |||| ||||| || || |||||||| ||||| || |||||||||||| Sbjct 6798 ACGGTTCTACCTCCAGCGTAATCGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 6740 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| || |||||||||||||| || || ||||||| | ||| ||| Sbjct 6268 AAAACCAAATGGAGGGTAGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCGTCT 6209 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||| ||||| || || | || | ||||| || ||| || | |||||||| || Sbjct 6208 TCCAACTGTTTACCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATACCTTCTTTATCT 6149 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 || || ||| || | | | | ||| |||||| ||||| ||| |||||| Sbjct 6148 TGTATCTTGGCTTTGACGTTTTCGATGGTGTCGGACGGTTCCACTTCCAAGGTGATGGTT 6089 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| | |||||| |||||||||||||| Sbjct 6088 TTTCCGGTGAGCGTTTTAACAAAAATTTGCAT 6057 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| || || ||||||||||| || ||||| |||| || ||| || Sbjct 5585 CAAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCGTC 5526 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| ||||| || || |||| | || ||| || ||| || | |||||||| || Sbjct 5525 TTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTATC 5466 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| ||| || | ||| | ||| ||||| ||| | ||| ||||| Sbjct 5465 TTGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGGT 5406 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 || || || | ||||| |||||||| ||||| || ||| Sbjct 5405 CTTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTTGAAA 5366 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || ||||| || || |||||||| || || ||||| |||| || || ||| Sbjct 6040 AAAACTAAATGAAGAGTGGATTCTTTCTGGATATTGTAGTCGCTCAAGGTACGTCCGTCT 5981 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 || ||||||||||| || |||| | | || || ||| || | |||||||| || Sbjct 5980 TCTAATTGTTTGCCAGCGAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCT 5921 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| |||||| | | | | ||| ||||| |||| ||||| || Sbjct 5920 TGAATTTTCGCTTTCACGTTTTCGATGGTATCTGATGGTTCTACCTCCAGCGTAATAGTC 5861 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || |||||||| ||||| || |||||||||||| Sbjct 5860 TTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 5828 >seq37708 Length=8338 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | |||||||||||||| || || |||||| || || | |||||| Sbjct 4661 ACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCTTCG 4720 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||||| ||| | || | | ||||| ||| || | |||||||||||| Sbjct 4721 AGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTGG 4780 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||||| | | | || |||| ||| || ||| | |||||| |||||| Sbjct 4781 ATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACTTCGAGGGTAATCGTTTTG 4840 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| ||||| || ||||||||||| Sbjct 4841 CCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||||| || || |||||||| |||||||||||| | ||| || ||||| Sbjct 4204 CACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTAATCGGAGAGCGTTCTACCGTCTTC 4263 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||||||||| || || |||| || | || || ||| || | || ||||| || Sbjct 4264 CAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTG 4323 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| || || | | | | |||| ||| || ||| | |||||| ||||| Sbjct 4324 AATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGGCTCAACTTCGAGGGTAATCGTTTT 4383 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||| ||||| || || |||||||| Sbjct 4384 GCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||||||||| ||||| || || | ||| || ||||| Sbjct 4889 ACCAAGTGAAGGGTTGATTCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCG 4948 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || || | || || | || |||||| || | ||||||||| || Sbjct 4949 AGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGG 5008 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | | | || |||| || || ||| | ||| |||||||| Sbjct 5009 ATTTTCGCTTTGACGTTTTCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTTA 5068 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 || ||||||||||| ||||| || ||||||||| Sbjct 5069 CCAGTCAACGTTTTAACAAAGATCTGCATTTTT 5101 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || || |||||||| || |||||||| || | |||| | |||||| Sbjct 3749 ACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAGAGAGTTCTTCCATCTTCG 3808 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || || | || || | ||||||||| || | ||||||||||| Sbjct 3809 AGTTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCTTTGTCTTGG 3868 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | | | | ||||| ||| || ||| | || || ||||| Sbjct 3869 ATTTTGGCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGTGTGATTGTTTTA 3928 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || || ||||| ||||| Sbjct 3929 CCGGTTAACGTCTTTACGAAAATCTGCAT 3957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419279855260662