Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq39349 122 7e-23 seq27620 95.1 1e-14 >seq39349 Length=17693 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCCTCGTTT 13230 |||| |||||| ||||| ||||| ||||| || ||||| ||||| || || | ||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAA--GTCAGACCAGGCATTAGGCCCCTTTT 11605 Query 13231 TTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290 ||||| |||||||||||| ||||| || ||||| || || ||||| || || ||||| Sbjct 11604 TTTAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAA 11545 Query 13291 CGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTT 13350 ||| || | || || ||| | || || | | | ||||||| || ||||||| Sbjct 11544 CGCAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTC 11485 Query 13351 TGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAT 13400 ||||||| ||| || || ||| |||| ||||| ||||||| | ||| Sbjct 11484 TGCTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGAAAAT 11435 >seq27620 Length=20860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 || || |||||||||||||| ||||| || ||||| | |||||| || | ||||| || Sbjct 17966 TAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGTGATTTGAAAT 17907 Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTT 13543 || ||||| |||| || |||| | |||||||| | || | || |||| ||| Sbjct 17906 CCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTCGACTAAATTT 17847 Query 13544 TCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttt 13603 || || || || || ||| || |||||||| || | | ||| ||| ||||||||| Sbjct 17846 TCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAATGAATTTTTTT 17787 Query 13604 tC 13605 || Sbjct 17786 TC 17785 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 12855 ACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAA 12914 || ||| ||| ||||||| ||||||||| || || || || ||||| || | || |||| Sbjct 18741 ACTTTTCTTG-TATTCGCCAACTCTTTTCTCGAAGAAATTCGTTTTACCATTCAAAGAAA 18683 Query 12915 TATTTTCCATAAAATCGAAAGGATTTT 12941 |||||||||||||||| || ||||||| Sbjct 18682 TATTTTCCATAAAATCAAATGGATTTT 18656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430666708355004