Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq48073 91.5 1e-13 seq15454 86.0 5e-12 seq37708 82.4 6e-11 >seq48073 Length=7537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || ||||| ||||| || ||| ||||||||||||||||| ||| ||| |||| Sbjct 6496 AAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAATCGCTCAAAGTTCGGCCGTCT 6437 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| ||| || ||| || ||||||| |||||||| || || | | ||| || ||| Sbjct 6436 TCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGAATGCCTTCTTTATCC 6377 Query 48635 ATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 |||||| ||| | |||| | || ||||| | | || || | || || Sbjct 6376 TGAATTTT-AGCT---TTGACGTTTTCAATCGTATCAGACGGTTCTACTTCCAGGGTAAT 6321 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||||| | ||||| |||||||| ||||| Sbjct 6320 GGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || |||||||| ||| || |||||||| ||||| || ||| || |||| Sbjct 5584 AAGACCAAATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGCTCAAAGTACGTCCGTCT 5525 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| ||| || ||| || ||||||| |||||||| || || | || ||| || || Sbjct 5524 TCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGGTCGGGTGGGATACCTTCTTTATCT 5465 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| |||| | | ||||| |||| | || || | || ||||| Sbjct 5464 TGAATTTTAGCTTTGACATTTTCAATGGTGTCGGACGGTTCGACTTCTAAGGTGATGGTC 5405 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || |||||||| ||||||||||||||| || Sbjct 5404 TTTCCAGTAAGAGTTTTAACAAAAATCTGCATCTTG 5369 >seq15454 Length=877 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| |||||||||| || || | || |||| ||||| ||| || | Sbjct 225 CCTTTCTGAATATTGTAATCAGATAACGTTCTACCATCTTCCAATTGCTTTCCGGCGAAG 166 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 |||||||| ||||| || || | || |||||| || |||||| |||| | Sbjct 165 ATTAAACGTTGCTGGTCGGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACATTT 106 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 |||| ||||| | || || |||| || || |||||||| || || |||||||| Sbjct 105 TCTATCGTATCCGAAGGTTCGACTTCGAGAGTGATAGTTTTACCCGTAAGGGTTTTCACG 46 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 45 AAAATCTGCATC 34 >seq37708 Length=8338 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||| || ||||| | | || | || || |||||||| ||| || | Sbjct 3310 CTCCTTTTGAATATTATAATCCGAAAGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAA 3369 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||||| ||| ||||||||| || | || ||| ||||| |||||| ||| | Sbjct 3370 AATTAGACGTTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATTTTCGCCTTAACGTT 3429 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || |||||| ||| ||| |||| || ||||||||||| || | || || || Sbjct 3430 TTCGATCGTATCGCTAGGCTCGACTTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGAC 3489 Query 48715 AAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744 || |||||||| | |||| |||| |||| Sbjct 3490 GAAGATCTGCATACCACCTCTTAATCGGAGAA 3521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420942636392102