Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4462 102 1e-16 seq52131 86.0 7e-12 >seq4462 Length=45351 Score = 102 bits (112), Expect = 1e-16 Identities = 206/299 (69%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 6937 TTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT- 6995 || ||||||||||| | |||||||| || |||| |||||| |||||| |||| Sbjct 38793 TTGAAAGGTACACCAAGACCCATATCGGCAGATCGTTGATACATTTGACACGATAGTTCG 38734 Query 6996 --ATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAAAACAGCCTGATC 7052 ||| || || ||||| || ||| | || ||||| |||||||| | | | Sbjct 38733 CCATTAACT---GCGTAAAACTG-CACCAAGCAGTGACACGGAGGTAAGGCCATTTTAGG 38678 Query 7053 TATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAA 7112 || |||| ||||||||||| | | || | |||||| | ||||| ||||||| Sbjct 38677 TAAATCAATGGGATTCCAAGCGCATAGGATTATTCTTCTATCGTCGGGATTA-TTTTTAA 38619 Query 7113 TTTTGT-TATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAAT 7171 | ||| ||| | |||| | |||||| || || | | ||||| ||| || || Sbjct 38618 TCGTGTCTATGACGTTTTGAAGTTGATCGATGCCTTTGTTTGTATAATCAGTGTGCATAT 38559 Query 7172 TTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCT 7230 | | || | |||||||||||||||||||| ||||| |||| |||||| | ||||||| Sbjct 38558 CTTTGTACTCGGCTCCAAAATGTCTCCATTGGAACCCGTAAACAGGACCAAGATCACCT 38500 >seq52131 Length=19655 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||| |||||||| | || || || || ||| | |||||||| || ||||| ||||| Sbjct 11517 AGGATGTAAACACGTGAAGGGTATATTGTTATACGGACCTCCGGGAACTGGTAAGACATT 11576 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGGT 164619 |||||||| |||| | || || || ||| || || |||||||| ||||| Sbjct 11577 GATGGCTCGTCAAATTGGTAAAATGTTGAATGCTCGAGAACCA--AAAATTGTGAATGGC 11634 Query 164620 CCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAG 164679 ||| || || || | || ||||| || ||||| ||||| || || | || ||| Sbjct 11635 CCTCAAATACTGGATAAGTATGTTGGAGAGTCTGAAGCAAACATTCGTCGATTATTTGCC 11694 Query 164680 GAGGCTGAAGAAGAACAAAA 164699 || |||||||||||| |||| Sbjct 11695 GATGCTGAAGAAGAAGAAAA 11714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595424336263200