Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9429 116 2e-21 seq43522 114 7e-21 seq9325 111 8e-20 >seq9429 Length=13781 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||||| | ||||||| | ||||||||| |||||||||| |||||||||||||||| Sbjct 4938 GAATTGAAAAAAAATTA---TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATT 4882 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 4881 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4848 >seq43522 Length=7723 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| || |||||||| |||||||||| ||||||||||||||||||||| Sbjct 5690 AATAAAAAATTTTAT-GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 5632 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 5631 GACGCTCTAACCAACTGAGCTAATGGGCC 5603 >seq9325 Length=22810 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 7677 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 7618 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 7617 CTGAGCTAATGGGCC 7603 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 7899 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 7840 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 7839 CTGAGCTAATGGGCC 7825 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261299659493752